CSE 590BI, Winter 1998
Algorithms in Molecular Biology

Richard Karp, Larry Ruzzo

TuTh 12:00-1:20, Loew 113

Contact Info:

  Email Phone Office Office Hours
Richard Karp karp@cs 543-4226 315 Sieg WF 2:00-3:00
Larry Ruzzo ruzzo@cs 543-6298 415 Sieg TuTh 9:00-10:00

Class Email: (Last update: 04/17/98 at 05AM.)

Schedule:

Lect Date Topic Lecturer Slides Notes (shaded=draft)
11/6Introductory ConceptsR.M. Karphtml pdf ps (from `96)pdf ps
21/8Sequence ComparisonW.L. Ruzzohtml pdf ps (from `96)pdf ps
31/13Sequence ComparisonW.L. Ruzzohtml pdf ps (from `96)pdf ps
41/15Sequence ComparisonW.L. Ruzzohtml pdf ps K.Y. Yeungpdf ps
51/20Statistical ModelsR.M. Karphtml pdf ps T. Idekerpdf ps
61/25Statistical ModelsR.M. Karphtml pdf ps J. Buhlerpdf ps
71/27Statistical ModelsR.M. Karphtml pdf ps T. Parikhpdf ps
81/29Gene FindingW.L. Ruzzohtml pdf ps M. Thambipdf ps
92/3Gene FindingW.L. Ruzzo      S. Sobtipdf ps
102/5Physical MappingR.M. Karphtml pdf ps C. Lambertpdf ps
112/10Sequence AssemblyP. Greenhtml pdf ps K. Gargpdf ps
122/12Sequence AssemblyP. Greenhtml pdf ps N. Sharmapdf ps
132/17 Physical MappingR.M. Karphtml pdf ps D. Fasulopdf ps
142/19Physical MappingR.M. Karphtml pdf ps A. Kellerpdf ps
152/24PhylogenyJ. Felsensteinhtml pdf ps K.Y. Yeungpdf ps
162/26PhylogenyJ. Felsensteinhtml pdf ps J. Buhlerpdf ps
173/3PhylogenyJ. Felsensteinhtml pdf ps E. Veepdf ps
183/5Genome RearrangementR. Shamirhtml pdf ps A. Liupdf ps
193/10Structure PredictionW.L. Ruzzo      R. Bonneaupdf ps
203/12Structure PredictionW.L. Ruzzo      E. Almpdf ps

Handouts:

Administrative Homework
PDF Acrobat: Syllabus HW 1 HW 2
PostScript: Syllabus HW 1 HW 2

About file formats: Course materials above are provided in several formats:
      
html:
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pdf:
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ps:
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ruzzo@cs.washington.edu
visits since 1/25/98.
(Last Update: 03/21/05 )