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This is a not-for-credit-but-for-fun series of informal
meetings to discuss recent work in computational biology, both
our own and others' from recent publications. A number of us also
go to the Ave. for lunch together before the meetings (info
below). Relevant
announcements will be sent through the cse590cb e-mail
list (link to past message archive at left). To be added to or
dropped from this
list, e-mail your request to cse590cb-request@cs.
schedule
- meetings: Tuesdays, 2:00-3:00 pm, Sieg 322
*We will meet in
Johnson 123
on 14 Aug, since 322 is
otherwise reserved.
| date |
discussion leader |
topic |
| 26 Jun |
Zasha Weinberg |
Decoding pooled experiment results with errors using Gibbs
sampling: Experiences with large-scale yeast 2-hybrid
system screens
- related paper: E. Knill, A. Schliep, D.C. Torney,
"Interpretation of Pooling Experiments Using the Markov
Chain Monte Carlo Method", J. Comp. Bio., vol 3 (#3) 1996,
pp. 395-406
-
technical report similar to above paper (ResearchIndex)
|
| 03 Jul |
Chris Saunders |
Model-based clustering of gene expression array data
|
| 10 Jul |
Jochen Jaeger |
Statistical soundness and validity of
gene scoring and classification methods
|
| 17 Jul |
Saurabh Sinha |
Learning "Found" Classes - A strategy for
multiway classification of genes based on
promoter region analysis. Joint work with
Mathieu Blanchette and Rimli Sengupta.
|
| 24 Jul |
no meeting |
no meeting |
| 31 Jul |
Ira Kalet |
"What I saw in Copenhagen this summer"
(ISMB review) |
| 07 Aug |
Dan Grossman |
"What [research] I did this summer"
- Determining candidate genes for the
response to carotid artery ligation in
rats: normalization w/ noisy data
- Determining regulatory elements in yeast
using sequence and
expression data (previously discussed
during 590CB in spring
quarter).
See Bussemaker
et. al's website or more information.
- Finding potentially important single
nucleotide polymorphisms
(SNPs) by mining several biological
databases.
See first few paragraphs of
the NCBI dbSNP FAQ for more information.
|
| 14 Aug |
Tim Robertson |
"Application of ab initio protein structure
prediction to gene annotation, i.e., ab initio
protein structural genomics"
note: This meeting will not be in Sieg
322. We will be meeting in Johnson 123 instead.
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lunches
- Tuesdays, 12:30 pm, Sieg Hall, near the HUB lawn
entrance
Don't go to CB hungry...come to lunch with us first. We'll meet
at Sieg, then walk over to the Ave. and deal with the always
difficult problem of deciding where to eat. Don't be
late, or you'll miss the CB lunch train!
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