CSE Comp Bio group logo University of Washington Department of Computer Science & Engineering
 CSE 590 CB, Winter 2003
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 Course Info   

Reading and Research in Computational Biology
Mondays, 3:30 - 4:50, EE1 025

CSE 590CB is a weekly seminar on Readings and Research in Computational Biology, open to all graduate students in the computer, biological, and mathematical sciences.
Organizers:  Bill Noble, Martin Tompa
Credit: 1-3 Variable
Grading: Credit/No Credit. Talk to the organizers if you are unsure of our expectations.
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 Schedule
Date Presenters/Participants Topic Papers
01/06 NO MEETING    
01/13 Andy Keller, Institute for Systems Biology Statistical model for validation of protein identifications made by tandem mass spectrometry  
01/20 Martin Luther King Day    
01/27 Tjaden, Weinberg, Noble Integration of genomic datasets Paper
02/03 Lambert, Sikorski, Sukharev, Tompa Comparative annotation in yeast species Papers
02/10 Prakash Finding motifs in protein sequences by phylogenetic footprinting Paper
02/17 Presidents Day    
02/24 Nick Tsinoremas, Rosetta Inpharmatics Systematic and comprehensive identification and characterization of mouse genes and transcripts  
03/03 Prakash, Yao, Samudrala Protein threading by linear programming Paper
03/10 Kok, Shavit, Noble Hierarchical Bayesian Markovian model for motifs Paper

 Papers, etc.

  Note on Electronic Access to Journals

Links to full papers below are often to journals that require a paid subscription. The UW Library is generally a paid subscriber, and you can freely access these articles if you do so from an on-campus computer. For off-campus access, look at the library "proxy server" instructions.  


1/27:

Integration of genomic datasets to predict protein complexes in yeast

2/03:

2/10:

Finding motifs in protein sequences by phylogenetic footprinting

3/03:

Protein threading by linear programming

3/10:

A hierarchical Bayesian Markovian model for motifs in biopolymer sequences



 Other  Seminars Past quarters of CSE 590CB
COMBI & Genome Sciences Seminars
Applied Math Department Mathematical Biology Journal Club
Biostatistics Seminars
Biochemistry Department Seminars
Microbiology Department Seminars
Zoology 525, Mathematical Biology Seminar Series

 Resources Molecular Biology for Computer Scientists, a primer by Lawrence Hunter (46 pages)
A Quick Introduction to Elements of Biology, a primer by Alvis Brazma et al.
S-Star Bioinformatics Online Course Schedule, a collection of video primers
CSE 527: Computational Biology
CSE 590TV: Computational Biology (Professional Masters Program)
Genome 540/541: Introduction to Computational Molecular Biology: Genome and Protein Sequence Analysis

CSE's Computational Molecular Biology research group
Interdisciplinary Ph.D. program in Computational Molecular Biology


CSE logo Department of Computer Science & Engineering
University of Washington
Box 352350
Seattle, WA  98195-2350
(206) 543-1695 voice, (206) 543-2969 FAX
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