Email/Bboard Log | (All mail sent to the seminar e-mail list, cse590cb@cs. Last: 09/30/99 at 08AM.) |
| Date | Topic | Presenters (Faculty Consultant) | Paper(s) |
|---|---|---|---|
| 10/07 | Protein Binding Sites | Saurabh Sinha (Martin Tompa) | Stormo et al. |
| 10/14 | Sequence Alignment with Data Quality Estimates | Stephen Ramsey, Pauline Ng (Ruzzo, Tompa) | States & Botstein |
| 10/21 | Gene Finding | Agatha Liu, Mathieu Blanchette (Larry Ruzzo) | Saltzberg et al. |
| 10/28 11/04 | Sequencing Strategies | Dan Fasulo, Brian Fox, Nitin Sharma (Dick Karp) | Meyers? Green? |
| 11/11 | Holiday | ||
| 11/18 11/25 | Multiple Sequence Alignment | Kayee Yeung, Ashish Sabharwal, Jeremy Buhler (Benno Schwikowski) | ??? |
| 12/02 | Protein Mass Spec. | John Yates | ??? |
| 12/09 | Using Sequence Duplications as Complex Markers in Evolution | Trey Ideker | ??? |
Here are the slides Stephen used for his part of the presentation on States and Botstein: (MS Word format)
There's a nice web site for Glimmer (described in the above paper), including links to the paper itself, how to get copies of the source code, and some related sites at: http://www.cs.jhu.edu/labs/compbio/glimmer.html
In addition to the Borodovsky papers cited in [4], Agatha says Borodovskii et al., Molecular Biology, 20, 833 (1986) "explains why a non-homogenous or non-uniform MM is prefered and how the training for a non-uniform MM would be done."