CSE 590CB:
Reading and Research in Computational Biology
Autumn 1998

Wednesdays, 3:30-5:00 Room 003, New EE Building

      

Email/Bboard Log

(All mail sent to the seminar e-mail list, cse590cb@cs. Last: 09/30/99 at 08AM.)

Schedule

DateTopicPresenters (Faculty Consultant)Paper(s)
10/07 Protein Binding Sites Saurabh Sinha
(Martin Tompa)
Stormo et al.
10/14 Sequence Alignment with Data Quality Estimates Stephen Ramsey, Pauline Ng
(Ruzzo, Tompa)
States & Botstein
10/21 Gene Finding Agatha Liu, Mathieu Blanchette
(Larry Ruzzo)
Saltzberg et al.
10/28
11/04
Sequencing Strategies Dan Fasulo, Brian Fox, Nitin Sharma
(Dick Karp)
Meyers? Green?
11/11 Holiday   
11/18
11/25
Multiple Sequence Alignment Kayee Yeung, Ashish Sabharwal, Jeremy Buhler (Benno Schwikowski) ???
12/02 Protein Mass Spec. John Yates ???
12/09 Using Sequence Duplications as Complex Markers in Evolution Trey Ideker ???

Papers and Other References

Protein Binding Sites

Alignment With Data Quality Estimates

Gene Finding & (Interpolated and/or Hidden) Markov Models

Sequencing Strategies

Multiple Sequence Alignment

Other Resources

Lecture notes from the two offerings of CSE590BI (Computational Biology) are available.


ruzzo@cs.washington.edu (Last Update: 11/05/98)