| Course Info |
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Reading and Research in Computational Biology
Wednesdays, 3:30-5:00, Loew 113
CSE 590 CB is an informal weekly seminar in Computational
Biology, open to all graduate students in the computer,
biological, and mathematical sciences.
| Instructors: |
Karp,
Ruzzo,
Tompa
|
| Credit: |
1-3 Variable |
| Grading: |
Credit/No Credit. Talk to instructors if
you're unsure about our expectations, registrar-wise.
|
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| Schedule |
| Date |
Topic |
Presenters (Faculty Consultant) |
Papers |
 |
| 1/06 |
Organizational Meeting | | |
| 1/13 |
DNA Computing | Trey Ideker, Vibha Sazawal, Saurabh Sinha (Ruzzo) |
1, 2, 3 |
| 1/20 |
Phylogeny: Split Decomposition |
Benno Schwikowski |
4, Etc.
|
| 1/27 |
Phylogeny: Rearrangements |
Mathieu Blanchette |
5, 6 |
| 2/03 |
Regulatory Networks |
Jeremy Buhler, Agatha Liu, Nitin Sharma, Ka
Yee Yeung (Karp, Sengupta, Tompa) |
7 |
| 2/10 | 8, 9 |
| 2/17 |
Single Nucleotide Polymorphisms |
Deborah Nickerson, MBT | |
| 2/24 |
Multiplex SBH |
Agatha Liu, Nitin Sharma, Saurabh Sinha (Karp) | |
| 3/03 |
Clustering Expression Array Data |
Amir Ben-Dor | 10 |
| 3/10 |
Gene Finding |
Max Robinson, Ken Yasuhara (Ruzzo) |
11, 12 |
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