COG0178: Key (Organism Protein ID#:): >Caulobacter crescentus 16126828: >Mesorhizobium loti 13470922: >Pseudomonas aeruginosa 15599430: >Rickettsia prowazekii 15604666: >Vibrio cholerae 15640421: >1Neisseria meningitidis Z2491 15794105: >2Neisseria meningitidis MC58 15676855: >Pasteurella multocida 15603816: >Haemophilus influenzae 16272207: >Lactococcus lactis 15673800: >Mycobacterium leprae strain 15827727: >Streptococcus pyogenes 15675653: >Deinococcus radiodurans 15806772: >Treponema pallidum 15639505: >Synechocystis 16330044: >Halobacterium 15791365: >1Helicobacter pylori 15645328: >Campylobacter jejuni 15791710: >2Helicobacter pylori 15611711: >Ureaplasma urealyticum 13357659: >Bacillus halodurans 15613277: >Chlamydophila pneumoniae 15618020: Motifs: Caulobacter 1 gggcgcatct ------TGCA GCGAAAACCT ACTCTGGCAA CAGTGATGTT Mesorhizobium 1 gccggcttcg ctgactgttg gagactgctc ccatgagccg gccacgtcaa Pseudomonas 1 aacaccctca tggaagaaac cgctgcaggg caaggcctca tgcccctgcc Rickettsia 1 agattactac cta------- ---------- ---------- ---------- Vibrio 1 ttcgctatct aaaCAATGCA TTTAAAAGCC AACCTGTAAC CTCTCAGGTT 1Neisseria 1 TTGTCATCCT TTTGTTCAAG CGGG------ -----TTAAA ATTGCCGACA 2Neisseria 1 TTGTCATCCT TTTGTTCAAG CGGG------ -----TTAAA ATTGCCGACA Pasteurella 1 atagtcctct tacgttt--- ---------- --TCTTTCAA ATTGTgctga Haemophilus 1 ---------- ---------- ---------- ---------- ---------- Lactococcus 1 aaaaacatgA ATATACACCT TCACTA---- ---------- ---------- Mycobacterium 1 ---------- ---------- ---------- ---------- ---------- Streptococcus 1 gacaagccct cctttttgat gattaactgg tagagattga catcaaacct Deinococcus 1 gggtgatcga ggttgaacat cgaatgattt acccca---- ---------- Treponema 1 tgcggtctgc cgcga----- ---------- ---------- ---------- Synechocystis 1 tatttctaag taaatggcga tcgccag--- ---------- ---------- Halobacterium 1 gtcgtgtgct g--------- ---------- ---------- ---------- 1Helicobacter 1 ---------- -------TCC TTTACATTCC TATCTTTAAA ATTGTCTCAT Campylobacter 1 cttggattt- ---------- ---------- ---------- ---------- 2Helicobacter 1 aaatt----- ---CCATTCC TTTACATTCC TATCTTTAAA ATTGTCTCAT Ureaplasma 1 a--------A ATATACTCCT TAATTA---- ---------- ---------- Bacillus 1 gtaa------ ---------- ---------- -----GCAAT CTCTTACTTA Chlamydophila 1 actgtcctat tg-------- ---------- ---------- ---------- ********** ********** ********** ********** ********** ********** ********** ********** ********** ********** ********** ********** ********** ********** ********** * ********** ****** ******** ********** *** **** ***** ********** *** **** ***** ********** ***** ***** Caulobacter 45 Gcgcccattc gctcagagac tacgcaccgc tatcaaggct tggcaaAGCG Mesorhizobium 51 ccttcaatag ccggttacgg aaaattgtga tctccgggag gttacgtcca Pseudomonas 51 gatg------ ---------- ---------- ---------- ---------- Rickettsia 14 ---------- ---------- ---------- -------TTT TAAATATTAT Vibrio 51 G--------- ---------- ---------- ---------- ---------- 1Neisseria 40 TTATAGCGGA AT-------- ---------- ---------- ---------- 2Neisseria 40 TTATAGCGGA AT-------- ---------- ---------- ---------- Pasteurella 36 tcattttgac ---------- ---------- ---------- ---------- Haemophilus 1 ---------- ---------- ---------- ---------- ---------- Lactococcus 27 ---------- ---------- ---------- ---------T ggagaagaca Mycobacterium 1 ---------- ---------- ---------- ---------- ------AGCG Streptococcus 51 ---------- ---------- ---------- ---------- ---------- Deinococcus 37 ---------- ---------- ---------- ---------- ---------- Treponema 16 ---------- ---------- ---------- ---------- ---------- Synechocystis 28 ---------- ---------- ---------- ---------- ---------- Halobacterium 12 ---------- ---------- ---------- ---------- ---------- 1Helicobacter 34 AaAATAATAG CATGTTTATC CTTAATCAAG CAAATATTTT TAACTCTTAT Campylobacter 10 ---------- ---------- --------AT CCAAGTTCTT TTAATATTAT 2Helicobacter 43 AgAATAATAG CATGTTTATC CTTAATCAAG CAAATATTTT TAACTCTTAT Ureaplasma 19 ---------- ---------- ---------- ---------T TAAATATTAT Bacillus 20 G--------- ---------- ---------- ---------- ---------- Chlamydophila 13 ---------- ---------- ---------- ---------- ---------- ********** ********** ********** ********** ********** ********** ********** ********** ********** ********** ********** ********** ********** ********** ********** * ******** ** ** ********** ********** * ******** ** *** ********** * ******** ** * ********** Caulobacter 241 ---------- ---------- ---------- ---------- ---------- Mesorhizobium 247 ---------- ---------- ---------- ---------- ---------- Pseudomonas 81 ---------- ---------- ---------- ---------- ---------- Rickettsia 29 ---------- ---------- -------TTG CAATAATAAA ATAAAAGagc Vibrio 65 ---------- ---------- ---------- --------TG ATACAACT-- 1Neisseria 84 CGCGGCTTCA GACGGCATCC GAGAAAGTGC TACAATATCG GTT------- 2Neisseria 84 CGCGGCTTCA GACGGCATCC GAGAAAGTGC TACAATACCG GTT------- Pasteurella 46 ---------- ---------- ---------- ---------- ---------- Haemophilus 1 ---------- ---------- ---------- ---------- -AAAAAAA-- Lactococcus 60 ---------- ---------- ---------- -AATAATAAA AGGAAAataa Mycobacterium 87 TGTAGGACAG C--------- ---------- ---------- ---------- Streptococcus 51 ---------- ---------- ---------- -----TGATA ATAAAGTCTT Deinococcus 179 TGCAGGACAG Ccaaaaggag cttc------ ---------- ---------- Treponema 16 ---------- ---------- ---------- ---------- ---------- Synechocystis 28 ---------- ---------- ---------- ---------- ---------- Halobacterium 12 ---------- ---------- ---------- ---------- ---------- 1Helicobacter 86 ---------- ---------- -------ATA AGAAATGATA ATAAAACC-- Campylobacter 34 ---------- ---------- -------TGC TAAAATCTTA AAT------- 2Helicobacter 95 ---------- ---------- -------ATA AGAAATGATA ATAAAACC-- Ureaplasma 167 ---------- ---------- ---------- --AAATGATA TAAATAAA-- Bacillus 149 ---------- ---------- ---------- CAATCATAAA GGTAAAGgag Chlamydophila 31 ---------- ---------- ---------- -CATGGTATA ATGAAATATT |||||| ********** ********** ********** ********** ********** ********** ********** ********** ********** ******** ********** ********** ********** ********** ******** ********** * *** ********** ******** *** ********** ******** *** ********** ******* *** ********** ****** *** ********** ***** * ****** ** *** ***** ** *** Caulobacter 241 ---------- ---------- ---------- ---------- ---------- Mesorhizobium 247 ---------- ---------- ---------- ---------- ---------- Pseudomonas 81 ---------- ---------- ---------- ---------- ---------- Rickettsia 52 ctataatact acagATTTTT TAAAAAA--- ---------- ---------- Vibrio 75 ----GTTT-- ----TTTTAT CCAGTAattg cttgcacttt gttcacgcta 1Neisseria 127 ---------- ---------- ---------- ---------- ---------- 2Neisseria 127 ---------- ---------- ---------- ---------- ---------- Pasteurella 46 ---------- ---------- ---------- --------TA TTTTGCCCTA Haemophilus 8 ----CCTC-- ----ATTTTT TATCTAAAAA AGtgcggtTA TTTTGCCTGA Lactococcus 79 ---------- ---------- ---------- ---------- ---------- Mycobacterium 98 ---------- ---------- ---------- ---------- ---------- Streptococcus 66 CTCAAGGA-- ----TTTTCT GAAAAAT--- ---------- ---------- Deinococcus 203 ---------- ---------- ---------- ---------- ---------- Treponema 16 ---------- ---------- ---------- ---------- ---------- Synechocystis 28 ---------- ---------- ---------- ---------- ---------- Halobacterium 12 ---------- ---------- ---------- ---------- ---------- 1Helicobacter 107 ----ATTC-- ----TTTTTT GAAGTATAAT AGCTCC---- ---------- Campylobacter 50 ---------- ---------- ---------- ---------- ---------- 2Helicobacter 116 ----ATTC-- ----TTTTTT GAAGTATAAT AGCTCC---- ---------- Ureaplasma 183 ----ATAC-- ----AATTTT TATTATTAAA AACaataact attaggtata Bacillus 169 gttttttgt- ---------- ---------- ---------- ---------- Chlamydophila 50 TTATATTC-- ----TTTTTT GAAAAAA--- ---------- ---------- ******** ****** ********** ****** ** ********** **** ****** ********** ****** **** ****** ********** *** **** ****** ******* **** ****** ****** **** ****** *** **** Caulobacter 241 ---------- ---------- ---------- ---------- ---------- Mesorhizobium 247 ---------- ---------- ---------- ---------- ---------- Pseudomonas 81 ---------- ---------- ---------- ---------- ---------- Rickettsia 79 ----TATCTC AAAATTTTGt agtaaagtga tt-------- ---------- Vibrio 115 tgtaatactt gctgcacttc ---G------ ---TTTAGCA AAGAGCAAcc 1Neisseria 127 ---------- ----TTCCTT TATT------ ---TTTCAGG CGGCATCCAT 2Neisseria 127 ---------- ----TTCCTT TATT------ ---TTTCAGG CGGCATCCAT Pasteurella 58 AAATGAGAAA AAGATCTATG Ttaaaaaata agaTTAACTG GATATTTGCA Haemophilus 48 AATTTTTTAA AAGATCTATA TATT------ ---TTAACTG GATATTTGCA Lactococcus 79 ---------- ---------- ---------- ---------- ---------- Mycobacterium 98 ---------- ---------- ---------- ---TTTAGGC AAGAGCAAga Streptococcus 87 ----TCTCAA tacttatcta ttataCCA-- ---------- -AAATTCGCA Deinococcus 203 ---------- ---------- ---------- ---------- ---------- Treponema 16 ---------- ---------- ---------- ---------- ---------- Synechocystis 28 ---------- ---------- -----CCA-- ---------- -AGATTAGCA Halobacterium 12 ---------- ---------- ---------- ---------- ---------- 1Helicobacter 133 ----TTTTAA TCCATTTTCT TATT------ ---TTAAGGA AACTCTTGCA Campylobacter 50 ---------- ----TTATTT AATG------ ---TTTAGGA AAGACT---- 2Helicobacter 142 ----TTTTAA TCCACTTTCT TATT------ ---TTAAGGA AACTC----- Ureaplasma 223 aat------- ---------- ---------- ---------- ---------- Bacillus 178 ---------- ---------- ---------- ---------- ---------- Chlamydophila 71 ----TATTAA AAAATTCTCT TTAT------ ---TAACTCA AACTCTTGag ********** ********** **** *** ******* ********** ****** ********** **** ******* ********** ****** ********** **** ******* ********** ****** ********** **** ******* ********** ****** ********** **** ******* ********** ****** **** ******* ******** **** ******* ***** *** *** COG0013: Key (Organism Protein ID#:): >Caulobacter crescentus 16126768: >Mesorhizobium loti 13470354: >Rickettsia prowazekii 15604686: >Pseudomonas aeruginosa 15596100: >Vibrio cholerae 15640567: >Haemophilus influenzae 16272755: >Xylella fastidiosa 15836729: >Pasteurella multocida 15603152: >1Neisseria meningitidis 15794680: >2Neisseria meningitidis 15677445: >Campylobacter jejuni 15791868: >Aquifex aeolicus 15606507: >Bacillus halodurans 15613830: >Synechocystis 16331117: >Buchnera 15617007: >1Helicobacter pylori 15645855: >2Helicobacter pylori 15612227: >Deinococcus radiodurans 15807291: >Chlamydophila pneumoniae 15618801: >Chlamydia trachomatis 15605482: >1Mycobacterium tuberculosis 15609692: >Lactococcus lactis 15673706: >2Mycobacterium leprae 15827174: >Streptococcus pyogenes 15675313: Motifs: Caulobacter 115 ---------- ---------- ---------- ---------- -CCG------ Mesorhizobium 24 ---AAGTCGG TCTATGAcct gatgcttaag taatcgagtt ctttagtacc Rickettsia 3 ---------- ---------- --------TT C--AGTGTAT TTTAatactg Pseudomonas 7 ---AGGTCGG CAATAGGCAA TAACTATCGC GCAAatacac tacaaccttg Vibrio 66 ---------- ---------- ---------- ---------- ---------- Haemophilus 104 ---AAGCCTT TTTATAAATT TCAAAAATAT GCAAAAATAg ggcgact--- Xylella 13 ---------- ---------- ---------- ---------- ---------- Pasteurella 142 ---AAGCTTT TTTATAAATA TCAAAAATAT GCAAGAATA- AGTAGAC--- 1Neisseria 58 ---AGGGCTT CAGACGGCAT TCAAAATCCC GCCACACTCT TCCG------ 2Neisseria 58 ---AGGGCTT CAGACGGCAT TCAAAATCCC GCCACACTCT TCCG------ Campylobacter 8 CTTAGAGAAA TAAAATTAAA TAAAAATGTT T--ATTGTAT TTTAgtttta Aquifex 30 ---------- ---------- --TGTTTCTC T--AATATAT CAATAAC--- Bacillus 41 ---------- ---------- ---------- ---------- ---------- Synechocystis 161 ---TGcaaaa tcttcaacta gac------- ---------- ---------- Buchnera 62 ---ATATTCT TTTATAAAGA TCATAAAAAT AAAACAATAT AATAAAT--- 1Helicobacter 12 ---------- -----TTAAT TTTGGATGTT T--AAAGTAT AATAAAC--- 2Helicobacter 12 ---------- -----TTAAT TTTGGATGTT T--AAAGTAT AATAAAC--- Deinococcus 33 ---AGGTCat ttttttcacg tcatgggggg tagaaacacc ccctcctgtg Chlamydophila 151 ATTAGGGATA GAGACGAAAA TAAAGAACTC TCCtataatg gcaaggaatc Chlamydia 2 ---------- ---------- ---------T CACACACTAT CCTTAAC--- 1Mycobacterium 22 ---------- --GACAGCCT TCTCATAATC CGGCGAATAG Gct------- Lactococcus 2 -TTAGATAAT AAAAATTAAC TTTAAAgaga gctctaaatg gtgagaatga 2Mycobacterium 180 -----GTCGT TAGACGGCCT TCTAATTGTC TGGCGAATAG Gttttggaat Streptococcus 8 ---------- ---------- ---------- ---------- ---------- ||||| |||||||||| | ********** ********** ********** ********** ******* ******* ********** ********** ********** ******* ******* ********** ********** ********** ******* ******* ********** ********** ********** ******* ******* ********** ********** ********** ******* ******* ********** ********** ********** **** ***** * ********** ********** * ******* **** ***** ********** * ******* **** ***** ********** * ****** ***** ******* * * ****** COG0050: Key (Organism Protein ID#:): >1Caulobacter crescentus 16125489: >2Caulobacter crescentus 16127429: >1Mesorhizobium loti 13470532: >2Mesorhizobium loti 13470531: >1Neisseria meningitidis Z2491 15793177: >2Neisseria meningitidis Z2491 15793162: >3Neisseria meningitidis MC58 15676052: >4Neisseria meningitidis MC58 15676067: >Rickettsia prowazekii 15604507: >Pseudomonas aeruginosa 15599473: >1Helicobacter pylori 26695 15645819: >1Pasturella multocida 15603611: >2Pasturella multocida 15603222: >1Haemophilus influenzae 16272575: >2Haemophilus influenzae 16272522: >1Vibrio cholerae 15640389: >2Vibrio cholerae 15640348: >Bacillus halodurans 15612695: >2Helicobacter pylori 15612193: >1Xylella fastidiosa 15839229: >2Xylella fastidiosa 15839217: >Campylobacter jejuni 15791834: >Synechocystis 16330913: >1Deinococcus radiodurans 15807044: >2Deinococcus radiodurans 15805338: >Aquifex aeolicus 15606942: >Streptococcus pyogenes 15674691: >Lactococcus lactis 15673843: >Ureaplasma urealyticum 13358086: >Chlamydia trachomatis 15605043: >1Mycobacterium tuberculosis 15607825: >Chlamydophila pneumoniae 15617998: >1Mycoplasma genitalium 12045310: >2Mycoplasma pneumoniae 13508404: >2Mycobacterium leprae 15828004: >Treponema pallidum 15639180: >Borrelia burgdorferi 15594821: Motifs: 1Caulobacter 147 cccgctagca ccagatgggt gattGGGCGG GTATAGCACA A-TGG-TAGT 2Caulobacter 12 ---------- ---------- ---------- ---CGGGAGA AGGAGCTGGT 1Mesorhizobium 19 CTCGGCGGCC GCCGCAATGG GCCATCAACT GGCCGTGAtc gagacaggaa 2Mesorhizobium 10 ---------- ---------- ---------- ---------- ---------- 1Neisseria 92 ---------- --------AA -----TGCGG GTGTAGCTCA A-TGG-TAGA 2Neisseria 2 ---------- ---------- ---------- ---------- ---------- 3Neisseria 92 ---------- --------AA -----TGCGG GTGTAGCTCA A-TGG-TAGA 4Neisseria 5 ---------- ---------- ---------- ---------- ---------- Rickettsia 124 atatatttaa tagtgtccAA -----TGCGG GTGTAGCTCA A-TGG-TAGA Pseudomonas 48 ---------- ---------- ------GCGG GTATAGTTCA G-TGG-TAGA 1Helicobacter 1 ---------- ---------- ---------- ----AGCTCA GTTGGCTAGA 1Pasturella 39 ---------- ---------- ------GCGG GCATCGTATA ATGGC-TATT 2Pasturella 13 ---------- ---------- ---------- ---------- -------AAA 1Haemophilus 43 ---------- ---------- ------GCGG GCATCGTATA ATGGC-TATT 2Haemophilus 2 ---------- ---------- ---------- ---------- ---------- 1Vibrio 7 ---------- ---------- ---------- ---------- ---------- 2Vibrio 25 ---------- ---------- ------GCGG GCATCGTATA ATGGC-TATT Bacillus 64 gtattcgc-- ---------- ---------- ---------- ---------- 2Helicobacter 1 ---------- ---------- ---------- -----GCTCA GTTGGCTAGA 1Xylella 62 ---------- ---------- ----GTGCGG GAGTAGTTCA A-AGG-TAGA 2Xylella 50 ---------- ---------- ---------- ---------- ---------- Campylobacter 1 ---------- ---------- ---------- ---------- ---------- Synechocystis 1 ---------- ---------- ---------- ---------- ---------- 1Deinococcus 15 ---------- ---------- ------GCGG GAATAGCTCA GTTGG-TAGA 2Deinococcus 139 CTCTCAGCCC GGTGCAACGT GCCAGAGAGC AGGCGGGACA CCGCCCTGGC Aquifex 38 ---------- ---------- ------GCGG GCGTAGCTCA GTTGG-TAGA Streptococcus 1 ---------- ---------- ---------- ---------- ---------- Lactococcus 17 ---------- ---------- ---------- ---------- ---------- Ureaplasma 1 ---------- ---------- ---------- ---------- ---------- Chlamydia 150 ---------- ---------- ---------- ---------- -------GAT 1Mycobacterium 29 ---------- ---------- ---------- ---------- ---------- Chlamydophila 20 ---------- ---------- ---------- ---------- ---------- 1Mycoplasma 4 ---------- ---------- ---------- ---------- ---------- 2Mycoplasma 11 ---------- ---------- ---------- ---------- -------CTA 2Mycobacterium 2 ---------- ---------- ---------- ----AGTTGA G-TGG-Tcgg Treponema 1 ---------- ---------- ---------- ---------- --GTGGTCGT Borrelia 24 ---------- ---------- ---------- ---------- ---------- ********** ********** ********** ********** ********** **** ********** ***** **** **** ********** * *** **** ***** * *** **** **** 1Caulobacter 195 GCAGCAGCCT TCCAAGCT-G AGGATGCGGG TTCGATTCCC GCTACCCGCT 2Caulobacter 29 GAGAATTGGG AAGGGGCCTC T--------- ---------- ---------- 1Mesorhizobium 69 ttggccggca agaa------ ---------- ---------- ---------- 2Mesorhizobium 10 ---------- ---------- ---------- ---------- ---------- 1Neisseria 117 GCAGAAGCCT TCCAAGCT-T ACGGTGAGGG TTCGATTCCC TTCACCCGCT 2Neisseria 2 ---------- ---------- ---CAGGCAA ATAGGCCG-- ---------- 3Neisseria 117 GCAGAAGCCT TCCAAGCT-T ACGGTGAGGG TTCGATTCCC TTCACCCGCT 4Neisseria 5 ---------- ---------- ---------A AAAGGCCG-- ---------- Rickettsia 167 GTTCCAGCCT TCCAAGCTGG ct-GTGTGGG TTCGATTCCC ATCACCCGCT Pseudomonas 70 ACCTCAGCCT TCCAAGCT-G ATGATGCGGG TTCGATTCCC GCTACCCGCT 1Helicobacter 17 GCATCAGCCT TCCAAGCTGA GGGTCGCGGG TTCGAGTCCC GTTTCCCGCT 1Pasturella 62 ACCTCAGCCT TCCAAGCT-G ATGATGCGGG TTCGATTCCC GCTGCCCGCT 2Pasturella 16 CCACAAGCTG TAATAGCT-T GTGGT----- ---------- ---------- 1Haemophilus 66 ACCTTAGCCT TCCAAGCT-A ATGATGCGGG TTCGATTCCC GCTGCCCGCT 2Haemophilus 2 ---------- ---------- ---------- ---------- ---------- 1Vibrio 7 ---------- ---------- ---------- ---------- ---------- 2Vibrio 48 ACCTCAGCCT TCCAAGCT-G ATGATGCGGG TTCGATTCCC GCTGCCCGCT Bacillus 72 ---------- ---------- ---------- ---------- ---------- 2Helicobacter 16 GCATCAGCCT TCCAAGCTGA GGGTCGCGGG TTCGAGTCCC GTTTCCCGCT 1Xylella 86 ACCTCAGCCT TCCAAGCT-G ATGGTGCGGG TTCGATTCCC GTCTCCCGCT 2Xylella 50 ---------- ---------- ---------- ---------- ---------- Campylobacter 1 GCATCAGCCT TCCAAGCTGA GGGTCGCGGG TTCGAGTCCC GTTTCCCGCT Synechocystis 1 ---------- ---------- ---------- ---------- ---------- 1Deinococcus 38 GCGTCAGCTT CCCAAGCTGA ATGTCGCGAG TTCGAGTCTC GTTTCCCGCT 2Deinococcus 189 GAGAATcaac ccaatgtggg tcacac---- ---------- ---------- Aquifex 61 GCAGCGGCCT TCCAAGCCGC AGGTCGCGGG TTCGAGTCCC GTCGCCCGCT Streptococcus 1 ---------- ---------- ---------- ---------- ---------- Lactococcus 17 ---------- ---------- ---------- ---------- ---------- Ureaplasma 1 ---------- ---------- ---------- ---------- ---------- Chlamydia 153 GCTAATTAGG TTGCTTCCTC T--------- ---------- ---------- 1Mycobacterium 29 ---AATGGGT ACagcgaagg cgaCGGGCGA CTAGGCGA-- ---------- Chlamydophila 20 ---------- ---------- ---------- ---------- ---------- 1Mycoplasma 4 ---------- ---------- ---------- ---------- --------CT 2Mycoplasma 14 CTCCAAGAAT TATAAGCC-T CTctacagct ---------- ---------- 2Mycobacterium 16 aaaagcctac gagt------ ---------- ---------- ---------- Treponema 9 GAGAATGGGT ACGccgtgta ctatttg--- ---------- ---------- Borrelia 24 ---------- ---------- ---------- ---------- ---------- ********** ********** ********** ********** ********** ********** ********** ********** ********** ********** ********** ******** * ********** ********** ********** ********** ******** * ********** ********** ********** ********** ******** * ********** ********** ********** ********** ******** ******** ********** ********** * ******* ******** ****** ********** ********** ***** ******* ***** ********** ********** ***** ********** * *** ********** 1Caulobacter 244 CCAGCTccct gaagagttat tCCCAACAAC CCAGCCGCCG GCGCGAAGGT 2Caulobacter 50 ---------- ---------- ------TTGG TCCcttccag cccaccccag 1Mesorhizobium 83 ---------- ---------- ---------- ---------- ---------- 2Mesorhizobium 10 ---------- ---------- ---------- ---------- ---------- 1Neisseria 166 CCAAAC---- ---------- ---------- ---------- ---------- 2Neisseria 17 --------TC CGAAAggctg AAATGATTTT TCA------- ---------- 3Neisseria 166 CCAAAC---- ---------- ---------- ---------- ---------- 4Neisseria 14 --------TC TGAAACTGA- AAATAAATTT TCA------- ---------- Rickettsia 216 CCAG------ ---------- ---------- ---------- ---------- Pseudomonas 119 CCAGTC---- ---------- ---------- ---------- ---------- 1Helicobacter 67 CCATTTTTAG GAtAACATTT ---TAGTTTT TGA------- ---------- 1Pasturella 111 CCAA------ ---------- ---------- ---------- ---------- 2Pasturella 40 ---------- ---------- ---------- ---------- ---------- 1Haemophilus 115 CCAG------ ---------- ---------- ---------- ---------- 2Haemophilus 2 ---------- ---------- ---------- ---------- ---------- 1Vibrio 7 ---------- ---------- ---------- ---------- ---------- 2Vibrio 97 CCACTC---- ---------- ---------- ---------- ---------- Bacillus 72 ---------- ---------- ---------- ---------- ---------- 2Helicobacter 66 CCATTTTTAG GAcAACATTT ---TAGTTTT TGA------- ---------- 1Xylella 135 CCATTG---- ---------- ---------- ---------- ---------- 2Xylella 50 ---------- ---------- ---------- ---------- ---------- Campylobacter 51 CCAATA---- ---------- ---------- ---------- ---------- Synechocystis 1 ---------- ---------- ---------- ---------- ---------- 1Deinococcus 88 tt-------- ---------- ---------- ---------- ---------- 2Deinococcus 215 ---------- ---------- -CACCAGAAC CTCGCGGCAT GCGCGGGGGA Aquifex 111 CCAATAtaaa aatcccttcc ttca------ ---------- ---------- Streptococcus 1 ---------- ---------- ---------- ---------- ---------- Lactococcus 17 ---------- ---------- ---------- ---------- ---------- Ureaplasma 1 ---------- ---------- ---------- ---------- ---------- Chlamydia 174 ---------- ---------- ------TTTG TGC------- ---------- 1Mycobacterium 64 --------TG CGAAgacgac cgctagtgag cgaagctcac gagcaatgag Chlamydophila 20 ---------- ---------- TTTAAAATAA GTG------- ---------- 1Mycoplasma 6 CCAGCTTATC TTAAACTTA- TTTAAAATTA ACA------- ---------- 2Mycoplasma 43 -----TTATC TCAAACTTA- TGTAAAATTA GAG------- ---------- 2Mycobacterium 30 ---------- ---------- ---------- ---------- ---------- Treponema 36 ---A------ ---------- ---------- ---------- ---------- Borrelia 24 ---GCTTTTC TTTAATTAA- TGTAAAGTTT ATA------- ---------- ********** ********** ********** ********** ********** ****** **** *** *** *** *** 1Caulobacter 301 ---------- ---------- ---------- ---------- ---------- 2Caulobacter 81 ---------- ---------- ---------- ---------- ---------- 1Mesorhizobium 83 ---------- ---------- ---------- ---------- ---------- 2Mesorhizobium 33 ---------- ---------- ---------- ---------- ---------- 1Neisseria 177 ------GGCC CATGTAGCTC AG-GGGTAGA GCACTCCCTT GGTAAGGGAG 2Neisseria 44 ------CGG- CATTGT---- ---------- ---------- ---------- 3Neisseria 177 ------GGCC CATGTAGCTC AG-GGGTAGA GCACTCCCTT GGTAAGGGAG 4Neisseria 40 ------CGGC CATTGT---- ---------- ---------- ---------- Rickettsia 232 ---------- ---------- ---------- ---------- ---------- Pseudomonas 140 ------CGCT CATGTAGCTC AGTTGGTAGA GCACACCCTT GGTAAGGGTG 1Helicobacter 99 ------CGCC TATATAGCTC AG-AGGCAGA GCACTTCCTT GGTAAGGAAG 1Pasturella 116 ------CGCT GATATAGCTC AGTTGGTAGA GCGCACCCTT GGTAAGGGTG 2Pasturella 40 ---------- ---------- ---------- ---------- ---------- 1Haemophilus 120 ------CGCT GATATAGCTC AGTTGGTAGA GCGCACCCTT GGTAAGGGTG 2Haemophilus 12 ---------- ---------- ---------- ---------- ---------- 1Vibrio 7 ---------- ---------- ---------- ---------- ---------- 2Vibrio 109 ---GAGTGCT GATATAGCTC AGATGGTAGA GCGCATCCTT GGTAAGGATG Bacillus 72 ---------- ---------- ---------- ---------- ---------- 2Helicobacter 98 ------CGCC TATATAGCTC AG-AGGCAGA GCACTTCCTT GGTAAGGAAG 1Xylella 178 -----GTGCT CACGTAGCTC AGTCGGTAGA GCACCTCCTT GGTAAGGAGG 2Xylella 77 ---------- ---------- ---------- ---------- ---------- Campylobacter 151 tctGAGCGCT CGTATGGCTC AG-AGGTAGA GCACTCCCTT GGTAAGGGAG Synechocystis 1 ---------- ---------- ---------- ---------- ---------- 1Deinococcus 93 ------CGCT CCTGTAGCTC AG-CGGTAGA GCACTCCCTT GGTAAGGGAG 2Deinococcus 262 ---------- ---------- ---------- ---------- --TTTTTACG Aquifex 142 ------AGCC CAGGTAGCTC AGTCGGTAGA GCGCACCCTT GGTAAGGGTG Streptococcus 1 ------TGCT CAAAAAactt gaactgctct gctgatttct taTTTTTGCG Lactococcus 29 ---CAGTGCT CAAAAAGAGA AGAgcaatac tagaactatt tta------- Ureaplasma 1 ---------- ---------- ---------- ---------- ---------- Chlamydia 183 ------AGCC CAGGTAGCTC AG-TGGTAGA GCACTTGCAT GGTAAGCAAG 1Mycobacterium 165 ---------- ---------- ---------- ---------- ---------- Chlamydophila 79 ------AGCC CAGATAGCTC AG-TGGTAGA GCACTTGCAT GGTAAGCAAG 1Mycoplasma 49 ---------- ---------- ---------- ---------- ---------- 2Mycoplasma 81 ---------- ---------- ---------- ---------- ---------- 2Mycobacterium 49 ---------- ---------- ---------- ---------- ---------- Treponema 38 ------TTCG GGTATATTTC CTTTGGAAGA GC-------- ---------- Borrelia 176 ---------- ---------- ---------- ---------- ---------- |||||| |||||||||| ||||||| ******* ********** ********** ********** ********** **** ********** ********** ********** ********** **** ********** ********** ********** ********** *** ********** ** ******* ********** ********** ** ********** ** ******* ********** ********** ******* ** ******* ********** ********** ****** ** ******* ********** ********** ****** ********** ********** ****** ********** ******* * ****** ********** ******* 1Caulobacter 301 ---------- ---------- ---------- ---------- ---------- 2Caulobacter 81 ---------- ---------- ---------- ---------- ---------- 1Mesorhizobium 83 ---------- ---------- ---------- ---------- ---------- 2Mesorhizobium 33 ---------- ---------- ---------- ---------- ---------- 1Neisseria 220 AGGCCGGCAG TTCAAATCTG -----C---- ---------- ---------- 2Neisseria 53 ---------- ---------- ---------- ---------- ---------- 3Neisseria 220 AGGTCGGCAG TTCAAATCTG -----C---- ---------- ---------- 4Neisseria 50 ---------- ---------- ---------- ---------- ---------- Rickettsia 232 ---------- ---------- ---------- ---------- ---------- Pseudomonas 184 AGGTCAGCGG TTCAAATCCG -----C---- ---------- ---------- 1Helicobacter 142 AGGTCGGCGG TTCAATTCCG -----C---- ---------- ---------- 1Pasturella 160 AGGTCGGCGG TTCAAATCCG -----C---- ---------- ---------- 2Pasturella 40 ---------- ---------- ---------- ---------- ---------- 1Haemophilus 164 AGGTCGGCGG TTCAAATCCG -----C---- ---------- ---------- 2Haemophilus 12 ---------- ---------- ---------- ---------- ---------- 1Vibrio 7 ---------- ---------- ---------- ---------- ---------- 2Vibrio 156 AGGTCGGCAG TTCGATTCTG -----C---- ---------- ---------- Bacillus 72 ---------- ---------- ---------- ---------- ---------- 2Helicobacter 141 AGGTCGGCGG TTCAATTCCG -----C---- ---------- ---------- 1Xylella 223 AGGTCGATGG TTCGATTCCA -----T---- ---------- ---------- 2Xylella 77 ---------- ---------- ---------- ---------- ---------- Campylobacter 200 AGGTCGCGGG TTCAATTCCC -----G---- ---------- ---------- Synechocystis 1 --GCCGGCAG TTCtcctagg actgcA---- ---------- ---------- 1Deinococcus 136 AGGTCATCGG TTCAAGTCCG -----A---- ---------- ---------- 2Deinococcus 270 TGTGAatcca ccgcttggag ggagtaagac a--------- ---------- Aquifex 186 AGGGCGCCGG TTCGAGTCCG -----G---- ---------- ---------- Streptococcus 45 TGTGAcatga gcccaaacag ctgctttttg ctgtggcaaa aataaagcgt Lactococcus 69 ---------- ---------- ---------- ---------- ---------- Ureaplasma 1 ---------- ---------- ---------- ---------- ---------- Chlamydia 226 TGGCCGTAGG TTCAATTCCT -----A---- ---------- ---------- 1Mycobacterium 165 ---------- ---------- ---------- ---------- ---------- Chlamydophila 122 CGGTCGTAGG TTCAATTCCT -----A---- ---------- ---------- 1Mycoplasma 49 ---------- ---------- ---------- ---------- ---------- 2Mycoplasma 81 ---------- ---------- ---------- ---------- ---------- 2Mycobacterium 49 ---------- ---------- ---------- ---------- ---------- Treponema 64 ---------- ---------- ---------- ---------- ---------- Borrelia 176 ---------- ---------- ---------- ---------- ---------- ********** ********** * ********** ********** * ********** ********** * ********** ********** * ********** ********** * ********** ******** ********** *** ****** *** * 1Caulobacter 301 ---------- ---------- ---------- ---------- ---------- 2Caulobacter 81 ---------- ---------- ---------- ---------- ---------- 1Mesorhizobium 83 ---------- ---------- ---CATGGGG TGCAGCCCTC GA-------- 2Mesorhizobium 33 ---------- ---------- ---------- ---------- ---------- 1Neisseria 241 ---------- ---------- --CCATGGGC ACCATCTCTC GA-------- 2Neisseria 53 ---------- ---------- ---------- ---------- ---------- 3Neisseria 241 ---------- ---------- --CCATGGGC ACCATCTCTC GA-------- 4Neisseria 50 ---------- ---------- ---------- ---------- ---------- Rickettsia 232 ---------- ---------- ---------- ---------- ---------- Pseudomonas 205 ---------- ---------- --TCATGAGC TCCATTTATC CAGGGGCAGA 1Helicobacter 163 ---------- ---------- --TTATAGGC TCCAGTTTAT AAT------- 1Pasturella 181 ---------- ---------- --CTATCAGC ACCAGTCCTA GT-------- 2Pasturella 40 ---------- ---------- ---------- ---------- ---------- 1Haemophilus 185 ---------- ---------- --CTATCAGC ACCAGTctta taattcctca 2Haemophilus 12 ---------- ---------- ---------- ---------- ---------- 1Vibrio 7 ---------- ---------- ---------- ---------- ---------- 2Vibrio 177 ---------- ---------- --CTATCAGC ACCAGCTCTA AGC------- Bacillus 72 ---------- ---------- ---------- ---------- ---------- 2Helicobacter 162 ---------- ---------- --TTATAGGC TCCAGTTTAT AAT------- 1Xylella 244 ---------- ---------- --TCGTGAGC ACCATagg-- ---------- 2Xylella 77 ---------- ---------- ---------- ---------- ---------- Campylobacter 221 ---------- ---------- --CTATGAGC TCCATGAATT ---------- Synechocystis 25 ---------- ---------- --ATCTGTGT AGAAACAATC ---------- 1Deinococcus 157 ---------- ---------- --TCAGGAGC TCCAACgaag aaatgcggcc 2Deinococcus 301 ---------- ---------- ---------- ---------- ---------- Aquifex 207 ---------- ---------- --TCCTGGGC TCCACTTCCC TGATA----- Streptococcus 95 ggaattccaa aggaagtcgc tgCTATAAGC ACCACCTaag gagagtatca Lactococcus 69 ---------- ---------- ---------- -CTACTTCAT AGATA----- Ureaplasma 1 ---------- ---------- ---------- ---------- ---------- Chlamydia 247 ---------- ---------- --TTCTGGGC AAAAGatatt ggtagc---- 1Mycobacterium 165 ---------- ---------- ---------- ---------- CCGCGGCATA Chlamydophila 143 ---------- ---------- --TTCTGGGC AGAAAGAATG ---------- 1Mycoplasma 49 ---------- ---------- ---------- ---------- ---------- 2Mycoplasma 81 ---------- ---------- ---------- ---------- ---------- 2Mycobacterium 49 ---------- ---------- ---------- ---------- CCGCGGATAA Treponema 64 ---------- ---------- ---------- ---------- ---------- Borrelia 176 ---------- ---------- -------GGG TCAATTTCTA AA-------- ******** ********** ********** ******** ******** ******** ***** ******** **** ****