Motifs in Upstream Sequences  #2                 

Genes:

1. hypothetical protein  Synechocystis sp. PCC 6803
2. similar to hypothetical proteins  Bacillus subtilis
3. hypothetical protein NMA0590  Neisseria meningitidis Z2491
4. conserved hypothetical protein  Neisseria meningitidis MC58
5. conserved hypothetical protein  Haemophilus influenzae Rd
6. unknown  Pasteurella multocida
7. conserved hypothetical protein  Pseudomonas aeruginosa PA01
8. conserved hypothetical protein  Vibrio cholerae
9. orf, hypothetical protein  Escherichia coli K12

Motifs:

#1: 

Occuring at about 130 

1:	---------- 

2:	---------- 

3:	GCTACACCCA 

4:	GGTACACGCA 

5:	GCTACACATA 

6:	---------- 

7:	---------- 

8:	--TGAAAGCG 

	9: GCTGAACGAG

#2:

Occuring at about 413

1:	---------- ----------  

2:	---------T TTTGATTCC-  

3:	---------- ----------  

4:	tctGAAATTT TTTCATTCCa  

5:	----AAATTT TTTCtaatcg  

6:	----AAATTT TTTAAGTCa- 

7:	---------- ----------  

8:	---GAAATTT TTGG----C-  

9:	---GAAACGA CGGC----A-