Set #1

Ta0444: Thermoplasma acidophilum - ID: 16081566

TVN1051: Thermoplasma volcanium - ID: 13541882

AF0937: Archaeoglobus fulgidus - ID: 2649659

MJ0324: Methanococcus jannaschii - ID: 15668498

APE1844: Aeropyrum pernix - ID: 14601666

DIALIGN Motifs

AF0937 5 ---------- ----------

APE1844 1 ---------- ----------

MJ0324 4 ----TCCTCA AGTTtaa---

Ta0444 31 CTTATCCTGC AGTTccataa

TVN1015 6 CTTATCtaat tcg-------

AF0937 5 ---------- ---------- ----------

APE1844 1 ---------- ---------- ----------

MJ0324 17 -------AGG AATTATTGAA AATAATTGAA

Ta0444 101 gcTAAATAAG GATCAATATA TTAGgg----

TVN1015 19 --TAAATAGG AATAATTGTA ATAGATTGTC

AF0937 5 -TTATATATC

APE1844 1 ----------

MJ0324 80 aTAATATATC

Ta0444 137 ----------

TVN1015 65 ----------

AF0937 24 ATTTAACGAA AA--------

APE1844 10 -GTTAAAGAA AA--------

MJ0324 100 TGTTAATATA AAtactttac

Ta0444 137 ---------- ----------

TVN1015 65 ---------- ----------

AF0937 36 ---Ac-CAGA AA-------- G---GAGGAG

APE1844 21 ---ATTCGGA AT-------- GAGAGAGGGA

MJ0324 170 taaATTATGA ATATAGTGGT GTTTAAG---

Ta0444 137 ----TTCAGA CT-------- GCGAGAT---

TVN1015 65 ------CTGA ATGTAGCCTA GCGACAT---

AF0937 58 ---------- ----------

APE1844 54 -------GAG at--------

MJ0324 200 -------TAA GAATATAAGG

Ta0444 161 tctcgagTAA TAATAGAAAA

TVN1015 89 -------GAG GAAAAagtgc

AF0937 58 ----------

APE1844 59 ----------

MJ0324 273 ATTTTTTCtt

Ta0444 185 ----------

TVN1015 109 ATTTATTCct

Set #2

PH1899: Pyrococcus horikoshii - ID: 14591642

PAB0187: Pyrococcus abyssi - ID: 14520494

MJ1048: Methanococcus jannaschii - ID: 15669237

VNG2654Gm: Halobacterium sp. NRC-1 - ID: 16554524

APE1432: Aeropyrum pernix - ID: 14601403

DIALIGN Motifs

APE1432 13 ------AGCC GCCCGTGGCc

MJ1048 2 ---------- ----------

PAB0187 1 ---------- ----------

PH1899 9 ------AGGC TCCtatatcg

VNG2654Gm 41 gccaccAGCC GCCCGTTGCt

APE1432 36 CTTCCACATC

MJ1048 2 ----------

PAB0187 1 ----------

PH1899 63 CTTCCTCATC

VNG2654Gm 101 ----------

APE1432 46 ----------

MJ1048 2 ----------

PAB0187 1 ---------T

PH1899 143 ACGGTACGCc

VNG2654Gm 107 ACGGTACGCT

APE1432 46 ---------- ---------- ----------

MJ1048 2 ---------- ---------- ----------

PAB0187 4 -CCTTCTC-- -----GAGAA CTTGGG----

PH1899 233 tCCTTTTC-- -----GAAAT ATTGGG----

VNG2654Gm 119 -CCGTTTCgt gatagGAAAA CTTGGGcgac

APE1432 51 ----------

MJ1048 7 TGCCTTTTca

PAB0187 22 ----------

PH1899 252 ----------

VNG2654Gm 258 TGCCTTTTtg

APE1432 51 ---------- ---------- ---------- ---------- ----------

MJ1048 47 caATAAGCTT TTAAACTTTt aacaaattaa TTAACTCAAC aactaaaaat

PAB0187 22 --AAAAGCTT TATAACTCTa cctt------ TTAAGTAAAC cCGAGCaagc

PH1899 252 --A------- ---------- ---------- ---------- ----------

VNG2654Gm 286 ---------- ---------- ---------- ---------- -CGAGCgccc

Set #3

AF2255: Archaeoglobus fulgidus - ID: 2648270

VNG2283G: Halobacterium sp. NRC-1 - ID: 15791093

MJ0564: Methanococcus jannaschii - ID: 15668744

MTH1683: Methanobacterium thermoautotrophicum str. Delta H - ID: 15679677

APE2166: Aeropyrum pernix - ID: 14601887

DIALIGN Motifs

AF2255 11 ---------- ----------

APE2166 16 TGAAAAcaaa t-CC------

MJ0564 45 TGAATAggtt gttctgttag

MTH1683 19 -------CTC TGCC------

VNG2283G 10 gcggtagCGC TCCC------

AF2255 11 --------GC AAAGGCAAGA

APE2166 56 acaACTCTGT g---------

MJ0564 125 tatg-TTTGT AAAAACAGAA

MTH1683 26 ---ACTCTGT AATGGCAAAA

VNG2283G 26 ---------- ----------

AF2255 30 ---------- ---------- -------ACA TCCAATGCAG

APE2166 95 TAAGTTCCCC ACACCTTCTG ACCAGCTCCA TCTGGGGCGG

MJ0564 250 AAAATTCTCC AGAACTTtct a--------- ----------

MTH1683 90 ---------- ---------- ---------- ----------

VNG2283G 44 ---------- -------CCG GCCACCTACG TCCAA-----