Set 6 Match 2 Revisited ======================= I re-ran FootPrinter on this set with ZP_00057715 removed. The result was unexpected. Instead of combining these motifs, more motifs were found. Motif-50 above was located (roughly): AAA79506 motif-49 36 44 2.00 cccagcaac NP_244166 motif-49 154 163 2.00 cccagcaacc NP_372314 motif-49 195 203 2.00 cccagcaac NP_390933 motif-49 236 245 2.00 cccagcaacc NP_465189 motif-49 245 254 2.00 cccagcaacc NP_471109 motif-49 233 242 2.00 cccagcaacc NP_622164 motif-49 135 144 2.00 cccggcaacc NP_646545 motif-49 195 203 2.00 cccagcaac NP_658797 motif-49 268 277 2.00 cccagcaacc NP_693235 motif-49 245 254 2.00 cccagcaacc NP_765013 motif-49 192 201 2.00 cccagcaacc So was motif-52 (again, roughly): AAA79506 motif-53 14 22 2.11 gagggacat NP_244166 motif-53 133 141 2.11 gagggacag NP_372314 motif-53 173 181 2.11 gagggacat NP_390933 motif-53 216 224 2.11 gagggacag NP_465189 motif-53 225 233 2.11 gagggactg NP_471109 motif-53 213 221 2.11 gagggactg NP_622164 motif-53 114 122 2.11 gagggaaag NP_646545 motif-53 173 181 2.11 gagggacat NP_658797 motif-53 248 256 2.11 gagggacag NP_693235 motif-53 225 233 2.11 gagggacag NP_765013 motif-53 170 178 2.11 gagggacat Additionally these motifs were found: AAA79506 motif-50 64 71 4.00 ggtgccaa NP_244166 motif-50 189 196 4.00 ggtgctaa NP_372314 motif-50 224 231 4.00 ggtgccaa NP_390933 motif-50 290 297 4.00 ggtgctaa NP_465189 motif-50 272 279 4.00 ggtgctaa NP_471109 motif-50 260 267 4.00 ggtgctaa NP_622164 motif-50 162 169 4.00 ggtgccaa NP_646545 motif-50 224 231 4.00 ggtgccaa NP_658797 motif-50 286 293 4.00 agtggtaa NP_693235 motif-50 272 279 4.00 ggtgctaa NP_765013 motif-50 218 225 4.00 ggtgccaa AAA79506 motif-52 45 52 2.88 ctcttttt NP_244166 motif-52 114 121 3.00 ctcttatc NP_372314 motif-52 155 162 3.00 ctcttatc NP_372314 motif-52 204 211 2.88 ctcttttt NP_390933 motif-52 197 204 3.00 ctcttatc NP_465189 motif-52 207 214 3.00 ctcttatc NP_471109 motif-52 195 202 3.00 ctcttatc NP_622164 motif-52 96 103 3.00 ctcttatc NP_646545 motif-52 155 162 3.00 ctcttatc NP_646545 motif-52 204 211 2.88 ctcttttt NP_658797 motif-52 229 236 3.00 ctcttatc NP_693235 motif-52 206 213 3.00 ctcttatt NP_765013 motif-52 152 159 3.00 ctcttatc See . Looking at the web page, there still seems to be a pattern of motifs appearing in all the sequences, though it was more complex: yellow (aqua/burgandy/purple overlapping) green blue There were some other instances of these motifs but this pattern of six motifs appears in all the sequences.