Jesse Davis

Post Doc

Address:
Dept. of Computer Science & Engineering
University of Washington
Box 352350
Seattle, WA 98195-2350

Telephone: (206) 616-1798
Fax: (206) 543-4229
Email: first initial + last name at cs dot washington dot edu
Office: 356 Allen Center

About Me

I am post-doc with Pedro Domingos at the University of Washington. I work on Markov logic networks, which are publicly available as the Alchemy system. I am also involved with our recent MURI award entitled A Unified Approach to Abductive Inference. I did my Ph.D at the University of Wisconsin-Madison. If you are interested you, can look at my old webpage

Education

Ph.D in Computer Sciences from the University of Wisconsin-Madison. (August 2007)

M.S. in Computer Sciences from the University of Wisconsin-Madison. (May 2005)

B.A. in Computer Science from Williams College. (June 2002)

Software

Mark Goadrich and I have written a java package for generating ROC and Precision Recall curves. It can also calculate the area under the curve. The jar file is available here. For more information about ROC and PR curves, see our paper at ICML 2006.

Seminars

I am currently running the machine learning reading group.

In the spring of 2008, I ran a seminar on Biomedical Applications of Artificial Intelligence.

Publications

Journals

Elizabeth S. Burnside, Jesse Davis, Jagpreet Chhatwal, Oguzhan Alagoz, Mary J. Lindstrom, Berta M. Geller,Benjamin Littenberg, Katherine A. Shaffer, Charles E. Kahn, Jr, and C. David Page (2009). Probabilistic Computer Model Developed from Clinical Data in National Mammography Database Format to Classify Mammographic Findings. In Radiology. Available here.

Refereed Conferences

Jesse Davis and Pedro Domingos (2009). Deep Transfer via Second-Order Markov Logic. To appear in the Proceedings of the 26th International Conference on Machine Learning (ICML). Available as PDF.

Jesse Davis, Vitor Santos Costa, Soumya Ray and David Page (2007). An Integrated Approach to Feature Construction and Model Building for Drug Activity Prediction. In the Proceedings of the 24th International Conference on Machine Learning (ICML). Available as PDF.

Jesse Davis, Irene Ong, Jan Struyf, Elizabeth Burnside, David Page and Vitor Santos Costa (2007). Change of Representation for Statistical Relational Learning. In the Proceedings of the 20th International Joint Conference on Artificial Intelligence (IJCAI). Available as PDF.

Jesse Davis and Mark Goadrich (2006). The Relationship Between Precision-Recall and ROC Curves. In the Proceedings of the 23rd International Conference on Machine Learning (ICML). Available as PDF.

Jan Struyf, Jesse Davis and David Page (2006). An Efficient Approximation to Lookahead in Relational Learners. In the Proceedings of the 17th European Conference on Machine Learning (ECML). Available as PDF.

Jesse Davis, Elizabeth Burnside, Ines Dutra, David Page, Raghu Ramakrishnan, Vitor Santos Costa and Jude Shavlik (2005). View Learning for Statistical Relational Learning: With an Application to Mammography. In the Proceedings of the International Joint Conference on Artificial Intelligence (IJCAI). Available as postscript or PDF.

Jesse Davis, Ines Dutra, David Page and Vitor Santos Costa (2005). Establishing Identity Equivalence in Multi-Relational Domains. In the Proceedings of the International Conference on Intelligence Analysis. Available as postscript, PDF or Word. Winner of the Best Technical Paper award.

Elizabeth S. Burnside, Jesse Davis, Vitor Santos Costa, Ines Dutra, Charles E. Kahn Jr., Jason P. Fine and David Page (2005). Knowledge Discovery from Structured Mammography Reports Using Inductive Logic Programming. In the Proceeding of the American Medical Informatics Association Annual Symposium (AMIA) . Will be available shortly.

Jesse Davis, Elizabeth Burnside, Ines Dutra, David Page, Vitor Santos Costa (2005). An Integrated Approach to Learning Bayesian Networks of Rules. In the Proceedings of the European Conference of Machine Learning (ECML). Available as postscript or PDF.

Book Chapters

Jesse Davis, Elizabeth Burnside, Ines Dutra, David Page, Raghu Ramakrishnan, Vitor Santos Costa and Jude Shavlik (2007). Learning a New View of a Database: With an Application to Mammography. In L. Getoor and B. Taskar, editors, An Introduction to Statistical Relational Learning, MIT Press.

Refereed Workshops

Jesse Davis and Pedro Domingos (2008). Deep Transfer via Second-Order Markov Logic. In the Proceedings of the AAAI-2008 Workshop on Transfer Learning for Complex Tasks. Chicago, IL: AAAI Press. Available as PDF

Jesse Davis, Eric Lantz, David Page, Jan Struyf, Peggy Peissig, Humberto Vidaillet and Michael Caldwell (2008). Machine Learning for Personalized Medicine: Will this Drug Give Me a Heart Attack? In the Proceedings of Machine Learning in Health Care Applications Workshop. In conjunction with ICML 2008.

Jesse Davis, Elizabeth Burnside, David Page and Vitor Santos Costa (2006). View Learning Extended: Inventing New Tables for Statistical Relational Learning. In the Proceedings of Open Problems in Statistical Relational Learning Workshop (SRL2006). In conjunction with ICML 2006.

Jesse Davis, Vitor Santos Costa, Irene Ong, David Page and Ines Dutra (2004). Using Bayesian Classifiers to Combine Rules. In the Proceedings of the 3rd Workshop on Multi-Relational Data Mining ( MRDM 2004). In conjunction with KDD 2004. Available as postscript or PDF.

Professional Service

Program Committee for the 21st International Joint Conference on Artificial Intelligence (IJCAI-09)
Program Committee for the 12th International Conference on Discovery Science (DS-09)
Program Committee for the 23rd Conference on Artificial Intelligence (AAAI-08)
Program Committee for the 25th International Conference on Machine Learning (ICML-08)
Program Committee for the 2008 IEEE International Conference on Data Mining (ICDM-08)
Program Committee for the 19th Brazilian Symposium on Artificial Intelligence (SBIA-08)
Reviewer for the Machine Learning Journal (2007,2008, 2009)
Reviewer for Transactions on Pattern Analysis and Machine Intelligence (2009)
Reviewer for the European Conference on Machine Learning and Principles and Practice of Knowledge Discovery in Databases (ECML PKDD) (2009)
Reviewer for the SRL Workshop (2009)
Reviewer for the ACM Transactions on Knowledge Discovery from Data (2007,2008)
Reviewer for the Journal of Artificial Intelligence Research (2007,2008)
Reviewer for the Annals of Mathematics and Artificial Intelligence (2008)
Reviewer for the 15th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB-07)
Reviewer for the 20th International Joint Conference on Artificial Intelligence (IJCAI-07)
Reviewer for the ACM Transactions on Computational Logic (2006)