Params: release/cmzasha --no-stderr --filter 130 25 /home/kasiaw/Rfam_7.0/CM/RF00001.cm /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta 1 specfile /home/kasiaw/results/Tetrahymena_thermophila.fasta/RF00001_5S_rRNA/RF00001_at25.filterspec Build: release Host: node022 pid: 714 ---time: Mon Jul 4 05:26:56 2005 ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----specfile: 2struct-str /home/kasiaw/Rfam_7.0_filters/RF00001_Bordetella_expanded.hmm 1/remember-nuc,48,r-ACU_-G,43,l-ACU_-G,85,l-ACU-G-_,84,r-AG_-CU 2struct-str /home/kasiaw/Rfam_7.0_filters/RF00001_Bordetella_expanded.hmm 1/remember-nuc,48,r-ACU_-G,43,l-ACU_-G,42,r-AU_-C-G,85,l-ACU-G-_,84,r-AG_-CU,72,l-ACGU-_ 2struct-str /home/kasiaw/Rfam_7.0_filters/RF00001_Bordetella_expanded.hmm 1/sub,41,83 2struct-str /home/kasiaw/Rfam_7.0_filters/RF00001_Bordetella_expanded.hmm 1/sub,35,114/sub,84,47 2struct-str /home/kasiaw/Rfam_7.0_filters/RF00001_Bordetella_expanded.hmm 1/sub,41,83/sub,69,98 Exploded HMM has 762 states ----hmm-from-cmFileName: /home/kasiaw/Rfam_7.0/CM/RF00001.cm ----hmm-build-info: ;(default construction of HMM) Params: release/cmzasha --create-rigorous-filter 130 25 /home/kasiaw/Rfam_7.0/CM/RF00001.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec Build: release Host: cs013 pid: 9026 ;Params: release/cmzasha --create-rigorous-filter 130 25 /home/kasiaw/Rfam_7.0/CM/RF00001.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec Build: release Host: cs013 pid: 9026 ----2struct-info: 1/remember-nuc,48,r-ACU_-G/remember-nuc,43,l-ACU_-G/remember-nuc,85,l-ACU-G-_/remember-nuc,84,r-AG_-CU Exploded HMM has 1424 states ----hmm-from-cmFileName: /home/kasiaw/Rfam_7.0/CM/RF00001.cm ----hmm-build-info: ;(default construction of HMM) Params: release/cmzasha --create-rigorous-filter 130 25 /home/kasiaw/Rfam_7.0/CM/RF00001.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec Build: release Host: cs013 pid: 9026 ;Params: release/cmzasha --create-rigorous-filter 130 25 /home/kasiaw/Rfam_7.0/CM/RF00001.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec Build: release Host: cs013 pid: 9026 ----2struct-info: 1/remember-nuc,48,r-ACU_-G/remember-nuc,43,l-ACU_-G/remember-nuc,42,r-AU_-C-G/remember-nuc,85,l-ACU-G-_/remember-nuc,84,r-AG_-CU/remember-nuc,72,l-ACGU-_ ----hmm-from-cmFileName: /home/kasiaw/Rfam_7.0/CM/RF00001.cm ----hmm-build-info: ;(default construction of HMM) Params: release/cmzasha --create-rigorous-filter 130 25 /home/kasiaw/Rfam_7.0/CM/RF00001.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec Build: release Host: cs013 pid: 9026 ;Params: release/cmzasha --create-rigorous-filter 130 25 /home/kasiaw/Rfam_7.0/CM/RF00001.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec Build: release Host: cs013 pid: 9026 ----2struct-info: 1/sub,41,83 ----hmm-from-cmFileName: /home/kasiaw/Rfam_7.0/CM/RF00001.cm ----hmm-build-info: ;(default construction of HMM) Params: release/cmzasha --create-rigorous-filter 130 25 /home/kasiaw/Rfam_7.0/CM/RF00001.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec Build: release Host: cs013 pid: 9026 ;Params: release/cmzasha --create-rigorous-filter 130 25 /home/kasiaw/Rfam_7.0/CM/RF00001.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec Build: release Host: cs013 pid: 9026 ----2struct-info: 1/sub,35,114/sub,84,47 ----hmm-from-cmFileName: /home/kasiaw/Rfam_7.0/CM/RF00001.cm ----hmm-build-info: ;(default construction of HMM) Params: release/cmzasha --create-rigorous-filter 130 25 /home/kasiaw/Rfam_7.0/CM/RF00001.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec Build: release Host: cs013 pid: 9026 ;Params: release/cmzasha --create-rigorous-filter 130 25 /home/kasiaw/Rfam_7.0/CM/RF00001.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec Build: release Host: cs013 pid: 9026 ----2struct-info: 1/sub,41,83/sub,69,98 ----cmFile: /home/kasiaw/Rfam_7.0/CM/RF00001.cm (global) ----CM-scanning-logic: Infernal-0.55 ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #67,emb|8254051| 162284 bp 4 contigs ----isReversed: 1 ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.537815 ----pairStats: 34,0,4,0 hit 0 : 54162 54044 (rev) 135.36 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 108123 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 108181 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 108182 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAAC 108240 : 119 c 119 C 108241 C 108241 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #251,emb|8254401| 113371 bp 1 contigs ----isReversed: 1 ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.537815 ----pairStats: 34,0,4,0 hit 1 : 50247 50129 (rev) 135.36 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 63125 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 63183 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 63184 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAAC 63242 : 119 c 119 C 63243 C 63243 ----endhit ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.537815 ----pairStats: 34,0,4,0 hit 2 : 50490 50372 (rev) 135.36 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 62882 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 62940 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 62941 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAAC 62999 : 119 c 119 C 63000 C 63000 ----endhit ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.537815 ----pairStats: 34,0,4,0 hit 3 : 50734 50616 (rev) 135.36 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 62638 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 62696 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 62697 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAAC 62755 : 119 c 119 C 62756 C 62756 ----endhit ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.537815 ----pairStats: 34,0,4,0 hit 4 : 50977 50859 (rev) 135.36 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 62395 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 62453 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 62454 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAAC 62512 : 119 c 119 C 62513 C 62513 ----endhit ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.537815 ----pairStats: 34,0,4,0 hit 5 : 51228 51110 (rev) 135.36 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 62144 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 62202 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 62203 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAAC 62261 : 119 c 119 C 62262 C 62262 ----endhit ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.537815 ----pairStats: 34,0,4,0 hit 6 : 51479 51361 (rev) 135.36 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 61893 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 61951 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 61952 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAAC 62010 : 119 c 119 C 62011 C 62011 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #310,emb|8255074| 1405 bp 1 contigs ----isReversed: 1 ----hitSequence: GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGAUAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.521008 ----pairStats: 34,0,4,0 hit 7 : 316 198 (rev) 133.00 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::U::C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 1090 GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 1148 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G::A:: 1149 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGAUAAC 1207 : 119 c 119 C 1208 C 1208 ----endhit ----hitSequence: GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGAUAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.521008 ----pairStats: 34,0,4,0 hit 8 : 558 440 (rev) 133.00 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::U::C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 848 GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 906 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G::A:: 907 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGAUAAC 965 : 119 c 119 C 966 C 966 ----endhit ----hitSequence: GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGAUAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.521008 ----pairStats: 34,0,4,0 hit 9 : 800 682 (rev) 133.00 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::U::C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 606 GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 664 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G::A:: 665 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGAUAAC 723 : 119 c 119 C 724 C 724 ----endhit ----hitSequence: GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGAUAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.521008 ----pairStats: 34,0,4,0 hit 10 : 1043 925 (rev) 133.00 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::U::C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 363 GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 421 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G::A:: 422 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGAUAAC 480 : 119 c 119 C 481 C 481 ----endhit ----hitSequence: GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGAUAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.521008 ----pairStats: 34,0,4,0 hit 11 : 1285 1167 (rev) 133.00 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::U::C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 121 GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 179 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G::A:: 180 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGAUAAC 238 : 119 c 119 C 239 C 239 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #388,emb|8254437| 547543 bp 2 contigs ----isReversed: 1 ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.537815 ----pairStats: 34,0,4,0 hit 12 : 118736 118618 (rev) 135.36 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 428808 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 428866 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 428867 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAAC 428925 : 119 c 119 C 428926 C 428926 ----endhit ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.537815 ----pairStats: 34,0,4,0 hit 13 : 118974 118856 (rev) 135.36 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 428570 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 428628 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 428629 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAAC 428687 : 119 c 119 C 428688 C 428688 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #449,emb|8254600| 816542 bp 6 contigs ----isReversed: 0 ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.537815 ----pairStats: 34,0,4,0 hit 14 : 147269 147387 (fwd) 135.36 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 147269 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 147327 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 147328 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAAC 147386 : 119 c 119 C 147387 C 147387 ----endhit ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.537815 ----pairStats: 34,0,4,0 hit 15 : 147024 147142 (fwd) 135.36 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 147024 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 147082 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 147083 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAAC 147141 : 119 c 119 C 147142 C 147142 ----endhit ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.537815 ----pairStats: 34,0,4,0 hit 16 : 146774 146892 (fwd) 135.36 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 146774 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 146832 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 146833 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAAC 146891 : 119 c 119 C 146892 C 146892 ----endhit ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.537815 ----pairStats: 34,0,4,0 hit 17 : 146529 146647 (fwd) 135.36 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 146529 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 146587 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 146588 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAAC 146646 : 119 c 119 C 146647 C 146647 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #470,emb|8254607| 557789 bp 5 contigs ----isReversed: 0 ----hitSequence: GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGAUAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.521008 ----pairStats: 34,0,4,0 hit 18 : 130154 130272 (fwd) 133.00 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::U::C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 130154 GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 130212 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G::A:: 130213 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGAUAAC 130271 : 119 c 119 C 130272 C 130272 ----endhit ----hitSequence: GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGAUAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.521008 ----pairStats: 34,0,4,0 hit 19 : 129899 130017 (fwd) 133.00 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::U::C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 129899 GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 129957 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G::A:: 129958 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGAUAAC 130016 : 119 c 119 C 130017 C 130017 ----endhit ----hitSequence: GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGAUAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.521008 ----pairStats: 34,0,4,0 hit 20 : 129648 129766 (fwd) 133.00 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::U::C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 129648 GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 129706 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G::A:: 129707 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGAUAAC 129765 : 119 c 119 C 129766 C 129766 ----endhit ----hitSequence: GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGAUAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.521008 ----pairStats: 34,0,4,0 hit 21 : 129403 129521 (fwd) 133.00 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::U::C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 129403 GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 129461 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G::A:: 129462 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGAUAAC 129520 : 119 c 119 C 129521 C 129521 ----endhit ----hitSequence: GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGAUAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.521008 ----pairStats: 34,0,4,0 hit 22 : 129164 129282 (fwd) 133.00 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::U::C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 129164 GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 129222 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G::A:: 129223 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGAUAAC 129281 : 119 c 119 C 129282 C 129282 ----endhit ----hitSequence: GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGAUAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.521008 ----pairStats: 34,0,4,0 hit 23 : 128918 129036 (fwd) 133.00 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::U::C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 128918 GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 128976 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G::A:: 128977 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGAUAAC 129035 : 119 c 119 C 129036 C 129036 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #504,emb|8253811| 495369 bp 4 contigs ----isReversed: 0 ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.537815 ----pairStats: 34,0,4,0 hit 24 : 53709 53827 (fwd) 135.36 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 53709 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 53767 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 53768 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAAC 53826 : 119 c 119 C 53827 C 53827 ----endhit ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.537815 ----pairStats: 34,0,4,0 hit 25 : 53455 53573 (fwd) 135.36 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 53455 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 53513 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 53514 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAAC 53572 : 119 c 119 C 53573 C 53573 ----endhit ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.537815 ----pairStats: 34,0,4,0 hit 26 : 53217 53335 (fwd) 135.36 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 53217 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 53275 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 53276 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAAC 53334 : 119 c 119 C 53335 C 53335 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #516,emb|8254470| 379103 bp 2 contigs ----isReversed: 0 ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.537815 ----pairStats: 34,0,4,0 hit 27 : 269616 269734 (fwd) 135.36 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 269616 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 269674 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 269675 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAAC 269733 : 119 c 119 C 269734 C 269734 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #516,emb|8254470| 379103 bp 2 contigs ----isReversed: 0 ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.537815 ----pairStats: 34,0,4,0 hit 28 : 283028 283146 (fwd) 135.36 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 283028 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 283086 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 283087 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAAC 283145 : 119 c 119 C 283146 C 283146 ----endhit ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.537815 ----pairStats: 34,0,4,0 hit 29 : 282777 282895 (fwd) 135.36 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 282777 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 282835 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 282836 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAAC 282894 : 119 c 119 C 282895 C 282895 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #516,emb|8254470| 379103 bp 2 contigs ----isReversed: 0 ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.537815 ----pairStats: 34,0,4,0 hit 30 : 284048 284166 (fwd) 135.36 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 284048 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 284106 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 284107 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAAC 284165 : 119 c 119 C 284166 C 284166 ----endhit ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.537815 ----pairStats: 34,0,4,0 hit 31 : 283798 283916 (fwd) 135.36 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 283798 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 283856 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 283857 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAAC 283915 : 119 c 119 C 283916 C 283916 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #588,emb|8254486| 430721 bp 2 contigs ----isReversed: 1 ----hitSequence: GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGAUAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.521008 ----pairStats: 34,0,4,0 hit 32 : 185533 185415 (rev) 133.00 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::U::C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 245189 GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 245247 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G::A:: 245248 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGAUAAC 245306 : 119 c 119 C 245307 C 245307 ----endhit ----hitSequence: GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGAUAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.521008 ----pairStats: 34,0,4,0 hit 33 : 185769 185651 (rev) 133.00 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::U::C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 244953 GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 245011 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G::A:: 245012 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGAUAAC 245070 : 119 c 119 C 245071 C 245071 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #588,emb|8254486| 430721 bp 2 contigs ----isReversed: 1 ----hitSequence: GUUAUCGGCCAUACUAAGGUGAAUACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGAUAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.521008 ----pairStats: 34,0,4,0 hit 34 : 184401 184283 (rev) 131.90 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::U::C::CCAUA::+AGG:G+A ACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 246321 GUUAUCGGCCAUACUAAGGUGAAUACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 246379 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G::A:: 246380 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGAUAAC 246438 : 119 c 119 C 246439 C 246439 ----endhit ----hitSequence: GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGAUAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.521008 ----pairStats: 34,0,4,0 hit 35 : 184636 184518 (rev) 133.00 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::U::C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 246086 GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 246144 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G::A:: 246145 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGAUAAC 246203 : 119 c 119 C 246204 C 246204 ----endhit ----hitSequence: GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGAUAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.521008 ----pairStats: 34,0,4,0 hit 36 : 184881 184763 (rev) 133.00 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::U::C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 245841 GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 245899 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G::A:: 245900 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGAUAAC 245958 : 119 c 119 C 245959 C 245959 ----endhit ----hitSequence: GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGAUAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.521008 ----pairStats: 34,0,4,0 hit 37 : 185117 184999 (rev) 133.00 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::U::C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 245605 GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 245663 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G::A:: 245664 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGAUAAC 245722 : 119 c 119 C 245723 C 245723 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #624,emb|8254638| 979488 bp 2 contigs ----isReversed: 0 ----hitSequence: GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGAUAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.521008 ----pairStats: 34,0,4,0 hit 38 : 169652 169770 (fwd) 133.00 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::U::C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 169652 GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 169710 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G::A:: 169711 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGAUAAC 169769 : 119 c 119 C 169770 C 169770 ----endhit ----hitSequence: GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGAUAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.521008 ----pairStats: 34,0,4,0 hit 39 : 169410 169528 (fwd) 133.00 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::U::C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 169410 GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 169468 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G::A:: 169469 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGAUAAC 169527 : 119 c 119 C 169528 C 169528 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #624,emb|8254638| 979488 bp 2 contigs ----isReversed: 0 ----hitSequence: GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGAUAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.521008 ----pairStats: 34,0,4,0 hit 40 : 620417 620535 (fwd) 133.00 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::U::C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 620417 GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 620475 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G::A:: 620476 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGAUAAC 620534 : 119 c 119 C 620535 C 620535 ----endhit ----hitSequence: GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGAUAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.521008 ----pairStats: 34,0,4,0 hit 41 : 620176 620294 (fwd) 133.00 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::U::C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 620176 GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 620234 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G::A:: 620235 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGAUAAC 620293 : 119 c 119 C 620294 C 620294 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #625,emb|8254492| 83344 bp 2 contigs ----isReversed: 0 ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.537815 ----pairStats: 34,0,4,0 hit 42 : 54347 54465 (fwd) 135.36 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 54347 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 54405 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 54406 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAAC 54464 : 119 c 119 C 54465 C 54465 ----endhit ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.537815 ----pairStats: 34,0,4,0 hit 43 : 54080 54198 (fwd) 135.36 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 54080 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 54138 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 54139 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAAC 54197 : 119 c 119 C 54198 C 54198 ----endhit ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.537815 ----pairStats: 34,0,4,0 hit 44 : 53813 53931 (fwd) 135.36 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 53813 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 53871 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 53872 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAAC 53930 : 119 c 119 C 53931 C 53931 ----endhit ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.537815 ----pairStats: 34,0,4,0 hit 45 : 53545 53663 (fwd) 135.36 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 53545 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 53603 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 53604 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAAC 53662 : 119 c 119 C 53663 C 53663 ----endhit ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.537815 ----pairStats: 34,0,4,0 hit 46 : 53278 53396 (fwd) 135.36 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 53278 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 53336 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 53337 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAAC 53395 : 119 c 119 C 53396 C 53396 ----endhit ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.537815 ----pairStats: 34,0,4,0 hit 47 : 53011 53129 (fwd) 135.36 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 53011 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 53069 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 53070 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAAC 53128 : 119 c 119 C 53129 C 53129 ----endhit ----hitSequence: GUUGUCUGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.529412 ----pairStats: 34,0,4,1 hit 48 : 52745 52863 (fwd) 127.24 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C :CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 52745 GUUGUCUGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 52803 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G: G:CA:: 52804 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAAC 52862 : 119 c 119 C 52863 C 52863 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #625,emb|8254492| 83344 bp 2 contigs ----isReversed: 1 ----hitSequence: ACCUUUGUUGUAAGGUGAAAACAACAGAUCCCAUUCGAACUCCGAAGUUAAGCACCUUAAGACUGGGUUAGUACUUAGGUAGGGGACCGCUUGGGAAGUCCCAAUG ----ssRNAplot: ....(....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))) ----hitGC: 0.462264 ----pairStats: 34,8,2,4 hit 49 : 66316 66211 (rev) 59.45 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 +C +: U :+AGG:G+AAACA C GAUCCCAU+C GAACUC GAAGUUAAGC:C 17029 ----ACCUUUGUUGUAAGGUGAAAACAACAGAUCCCAUUC-GAACUCCGAAGUUAAGCAC 17083 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A: : :G::+U GUACU GGU:GG GAC:+C UGGGAA :: : : : 17084 CUUAAGACUGGGUUaGUACUUAGGUAGGGGACCGCUUGGGAAgUCCCAAU-G-------- 17134 : 119 c 119 - - - ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #638,emb|8254496| 209627 bp 2 contigs ----isReversed: 1 ----hitSequence: GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGAUAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.521008 ----pairStats: 34,0,4,0 hit 50 : 173626 173508 (rev) 133.00 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::U::C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 36002 GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 36060 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G::A:: 36061 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGAUAAC 36119 : 119 c 119 C 36120 C 36120 ----endhit ----hitSequence: GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGAUAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.521008 ----pairStats: 34,0,4,0 hit 51 : 173867 173749 (rev) 133.00 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::U::C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 35761 GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 35819 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G::A:: 35820 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGAUAAC 35878 : 119 c 119 C 35879 C 35879 ----endhit ----hitSequence: UUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGAUAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.512605 ----pairStats: 34,0,4,1 hit 52 : 174124 174006 (rev) 130.31 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 :U::C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 35504 UUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 35562 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G::A: 35563 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGAUAAC 35621 : 119 c 119 C 35622 C 35622 ----endhit ----hitSequence: GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGAUAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.521008 ----pairStats: 34,0,4,0 hit 53 : 174382 174264 (rev) 133.00 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::U::C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 35246 GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 35304 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G::A:: 35305 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGAUAAC 35363 : 119 c 119 C 35364 C 35364 ----endhit ----hitSequence: GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGAUAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.521008 ----pairStats: 34,0,4,0 hit 54 : 174636 174518 (rev) 133.00 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::U::C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 34992 GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 35050 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G::A:: 35051 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGAUAAC 35109 : 119 c 119 C 35110 C 35110 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #656,emb|8254644| 356951 bp 1 contigs ----isReversed: 0 ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.537815 ----pairStats: 34,0,4,0 hit 55 : 16341 16459 (fwd) 135.36 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 16341 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 16399 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 16400 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAAC 16458 : 119 c 119 C 16459 C 16459 ----endhit ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.537815 ----pairStats: 34,0,4,0 hit 56 : 16098 16216 (fwd) 135.36 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 16098 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 16156 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 16157 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAAC 16215 : 119 c 119 C 16216 C 16216 ----endhit ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.537815 ----pairStats: 34,0,4,0 hit 57 : 15852 15970 (fwd) 135.36 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 15852 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 15910 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 15911 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAAC 15969 : 119 c 119 C 15970 C 15970 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #669,emb|8254649| 819627 bp 9 contigs ----isReversed: 1 ----hitSequence: GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGAUAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.521008 ----pairStats: 34,0,4,0 hit 58 : 428482 428364 (rev) 133.00 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::U::C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 391146 GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 391204 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G::A:: 391205 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGAUAAC 391263 : 119 c 119 C 391264 C 391264 ----endhit ----hitSequence: GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGAUAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.521008 ----pairStats: 34,0,4,0 hit 59 : 428731 428613 (rev) 133.00 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::U::C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 390897 GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 390955 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G::A:: 390956 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGAUAAC 391014 : 119 c 119 C 391015 C 391015 ----endhit ----hitSequence: GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGAUAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.521008 ----pairStats: 34,0,4,0 hit 60 : 428976 428858 (rev) 133.00 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::U::C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 390652 GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 390710 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G::A:: 390711 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGAUAAC 390769 : 119 c 119 C 390770 C 390770 ----endhit ----hitSequence: GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGAUAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.521008 ----pairStats: 34,0,4,0 hit 61 : 429226 429108 (rev) 133.00 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::U::C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 390402 GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 390460 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G::A:: 390461 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGAUAAC 390519 : 119 c 119 C 390520 C 390520 ----endhit ----hitSequence: GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGAUAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.521008 ----pairStats: 34,0,4,0 hit 62 : 429456 429338 (rev) 133.00 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::U::C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 390172 GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 390230 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G::A:: 390231 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGAUAAC 390289 : 119 c 119 C 390290 C 390290 ----endhit ----hitSequence: GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGAUAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.521008 ----pairStats: 34,0,4,0 hit 63 : 429706 429588 (rev) 133.00 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::U::C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 389922 GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 389980 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G::A:: 389981 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGAUAAC 390039 : 119 c 119 C 390040 C 390040 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #681,emb|8253850| 425044 bp 4 contigs ----isReversed: 1 ----hitSequence: GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGAUAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.521008 ----pairStats: 34,0,4,0 hit 64 : 123886 123768 (rev) 133.00 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::U::C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 301159 GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 301217 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G::A:: 301218 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGAUAAC 301276 : 119 c 119 C 301277 C 301277 ----endhit ----hitSequence: GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGAUAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.521008 ----pairStats: 34,0,4,0 hit 65 : 124113 123995 (rev) 133.00 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::U::C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 300932 GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 300990 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G::A:: 300991 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGAUAAC 301049 : 119 c 119 C 301050 C 301050 ----endhit ----hitSequence: GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGAUAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.521008 ----pairStats: 34,0,4,0 hit 66 : 124355 124237 (rev) 133.00 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::U::C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 300690 GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 300748 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G::A:: 300749 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGAUAAC 300807 : 119 c 119 C 300808 C 300808 ----endhit ----hitSequence: GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGAUAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.521008 ----pairStats: 34,0,4,0 hit 67 : 124591 124473 (rev) 133.00 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::U::C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 300454 GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 300512 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G::A:: 300513 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGAUAAC 300571 : 119 c 119 C 300572 C 300572 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #739,emb|8254665| 877599 bp 13 contigs ----isReversed: 1 ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.537815 ----pairStats: 34,0,4,0 hit 68 : 370188 370070 (rev) 135.36 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 507412 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 507470 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 507471 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAAC 507529 : 119 c 119 C 507530 C 507530 ----endhit ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.537815 ----pairStats: 34,0,4,0 hit 69 : 370438 370320 (rev) 135.36 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 507162 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 507220 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 507221 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAAC 507279 : 119 c 119 C 507280 C 507280 ----endhit ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.537815 ----pairStats: 34,0,4,0 hit 70 : 370691 370573 (rev) 135.36 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 506909 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 506967 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 506968 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAAC 507026 : 119 c 119 C 507027 C 507027 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #760,emb|8254812| 76081 bp 6 contigs ----isReversed: 1 ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.537815 ----pairStats: 34,0,4,0 hit 71 : 43731 43613 (rev) 135.36 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 32351 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 32409 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 32410 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAAC 32468 : 119 c 119 C 32469 C 32469 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #765,emb|8254814| 591214 bp 5 contigs ----isReversed: 0 ----hitSequence: GCUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAGCC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.554622 ----pairStats: 34,0,4,0 hit 72 : 489079 489197 (fwd) 136.58 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 :CUG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 489079 GCUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 489137 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CAG: 489138 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAGC 489196 : 119 c 119 C 489197 C 489197 ----endhit ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.537815 ----pairStats: 34,0,4,0 hit 73 : 488847 488965 (fwd) 135.36 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 488847 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 488905 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 488906 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAAC 488964 : 119 c 119 C 488965 C 488965 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #765,emb|8254814| 591214 bp 5 contigs ----isReversed: 0 ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.537815 ----pairStats: 34,0,4,0 hit 74 : 490751 490869 (fwd) 135.36 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 490751 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 490809 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 490810 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAAC 490868 : 119 c 119 C 490869 C 490869 ----endhit ----hitSequence: GCUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAGCC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.554622 ----pairStats: 34,0,4,0 hit 75 : 490502 490620 (fwd) 136.58 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 :CUG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 490502 GCUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 490560 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CAG: 490561 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAGC 490619 : 119 c 119 C 490620 C 490620 ----endhit ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.537815 ----pairStats: 34,0,4,0 hit 76 : 490273 490391 (fwd) 135.36 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 490273 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 490331 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 490332 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAAC 490390 : 119 c 119 C 490391 C 490391 ----endhit ----hitSequence: GCUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAGCC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.554622 ----pairStats: 34,0,4,0 hit 77 : 490024 490142 (fwd) 136.58 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 :CUG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 490024 GCUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 490082 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CAG: 490083 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAGC 490141 : 119 c 119 C 490142 C 490142 ----endhit ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.537815 ----pairStats: 34,0,4,0 hit 78 : 489770 489888 (fwd) 135.36 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 489770 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 489828 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 489829 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAAC 489887 : 119 c 119 C 489888 C 489888 ----endhit ----hitSequence: GCUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAGCC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.554622 ----pairStats: 34,0,4,0 hit 79 : 489524 489642 (fwd) 136.58 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 :CUG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 489524 GCUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 489582 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CAG: 489583 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAGC 489641 : 119 c 119 C 489642 C 489642 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #768,emb|8254815| 909308 bp 16 contigs ----isReversed: 0 ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.537815 ----pairStats: 34,0,4,0 hit 80 : 243920 244038 (fwd) 135.36 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 243920 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 243978 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 243979 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAAC 244037 : 119 c 119 C 244038 C 244038 ----endhit ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.537815 ----pairStats: 34,0,4,0 hit 81 : 243667 243785 (fwd) 135.36 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 243667 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 243725 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 243726 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAAC 243784 : 119 c 119 C 243785 C 243785 ----endhit ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.537815 ----pairStats: 34,0,4,0 hit 82 : 243410 243528 (fwd) 135.36 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 243410 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 243468 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 243469 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAAC 243527 : 119 c 119 C 243528 C 243528 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #768,emb|8254815| 909308 bp 16 contigs ----isReversed: 0 ----hitSequence: GUUGUUGGUCAUACUAAGGUUUUCGAAAACACCAGAUCCCAUUCUAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCUUAGUGUUGAUAAAU ----ssRNAplot: (((((((((....((.(((....((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.447154 ----pairStats: 34,0,8,3 hit 83 : 386037 386159 (fwd) 83.25 bits (((((((((,,,,<<-<<<....<<---<<--<<<<<<_______>>-->>>>-->>--- 1 ccugGCgGCCAUAGCGagg....gGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAA 56 :U ::G::CAUA::+AGG :G+AAACACC GAU CCAU+C AACUC GAAGUUAA 386037 GUUGUUGGUCAUACUAAGGuuuuCGAAAACACCAGAUCCCAUUC-UAACUCCGAAGUUAA 386095 ->>>>>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))) 57 GCcccucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGC 114 GC:CCU+A::GC:G :+U GUACU GGUGGG GACC+C UGGGAA : :GU ::U:: 386096 GCGCCUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCUUAGU-GUUGA 386154 )))): 115 caggc 119 A: + 386155 UAAAU 386159 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #768,emb|8254815| 909308 bp 16 contigs ----isReversed: 0 ----hitSequence: GUUGUCGGCCAUACUAAGUUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGCCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.537815 ----pairStats: 34,0,3,1 hit 84 : 386287 386405 (fwd) 130.38 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C:GCCAUA::+AG :G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC: 386287 GUUGUCGGCCAUACUAAGUUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 386345 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU GC:G:CA:: 386346 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GCCGACAAC 386404 : 119 c 119 C 386405 C 386405 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #768,emb|8254815| 909308 bp 16 contigs ----isReversed: 0 ----hitSequence: GCCUUAUGGCUGGGUUAGUACUAAGAUCCAAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGAACCGCUUGGGAAGUCCCAAUGU ----ssRNAplot: ...(....((.(((((...((.((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))). ----hitGC: 0.495238 ----pairStats: 34,8,5,6 hit 85 : 387460 387564 (fwd) 33.18 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 GC : AU GG::+ AC : GAUCC AU+C GAACUC :AAGUUAAG::C 387460 ----GCC-UUAUGGCUGGGUUAGUACU-AAGAUCCAAUUC-GAACUCCGAAGUUAAGCGC 387512 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 C +A G :G::+U GUACU GGUGGG ACC+C UGGGAA :: : U :+ 387513 CUUAAGGCUGGGUUaGUACUAAGGUGGGGAACCGCUUGGGAAgUCCCAAU-GU------- 387564 : 119 c 119 - - - ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #768,emb|8254815| 909308 bp 16 contigs ----isReversed: 0 ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAUUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.529412 ----pairStats: 34,0,4,1 hit 86 : 387701 387819 (fwd) 128.85 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAA ACC:GAUCCCAU+C GAACUC:GAA UUAAGC:C 387701 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAUUUAAGCGC 387759 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 387760 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAAC 387818 : 119 c 119 C 387819 C 387819 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #768,emb|8254815| 909308 bp 16 contigs ----isReversed: 0 ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCUCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.529412 ----pairStats: 34,0,4,0 hit 87 : 395142 395260 (fwd) 132.90 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUC CAU+C GAACUC:GAAGUUAAGC:C 395142 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCUCAUUC-GAACUCCGAAGUUAAGCGC 395200 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 395201 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAAC 395259 : 119 c 119 C 395260 C 395260 ----endhit ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.537815 ----pairStats: 34,0,4,0 hit 88 : 394897 395015 (fwd) 135.36 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 394897 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 394955 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 394956 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAAC 395014 : 119 c 119 C 395015 C 395015 ----endhit ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.537815 ----pairStats: 34,0,4,0 hit 89 : 394650 394768 (fwd) 135.36 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 394650 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 394708 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 394709 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAAC 394767 : 119 c 119 C 394768 C 394768 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #776,emb|8254671| 583021 bp 6 contigs ----isReversed: 0 ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.537815 ----pairStats: 34,0,4,0 hit 90 : 563517 563635 (fwd) 135.36 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 563517 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 563575 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 563576 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAAC 563634 : 119 c 119 C 563635 C 563635 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #776,emb|8254671| 583021 bp 6 contigs ----isReversed: 0 ----hitSequence: GCUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAGCC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.554622 ----pairStats: 34,0,4,0 hit 91 : 564349 564467 (fwd) 136.58 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 :CUG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 564349 GCUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 564407 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CAG: 564408 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAGC 564466 : 119 c 119 C 564467 C 564467 ----endhit ----hitSequence: GCUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAGCC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.554622 ----pairStats: 34,0,4,0 hit 92 : 564074 564192 (fwd) 136.58 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 :CUG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 564074 GCUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 564132 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CAG: 564133 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAGC 564191 : 119 c 119 C 564192 C 564192 ----endhit ----hitSequence: GCUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAGCC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.554622 ----pairStats: 34,0,4,0 hit 93 : 563836 563954 (fwd) 136.58 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 :CUG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 563836 GCUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 563894 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CAG: 563895 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAGC 563953 : 119 c 119 C 563954 C 563954 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #782,emb|8254819| 1807540 bp 14 contigs ----isReversed: 0 ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.537815 ----pairStats: 34,0,4,0 hit 94 : 1224364 1224482 (fwd) 135.36 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 1224364 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 1224422 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 1224423 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAAC 1224481 : 119 c 119 C 1224482 C 1224482 ----endhit ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.537815 ----pairStats: 34,0,4,0 hit 95 : 1224128 1224246 (fwd) 135.36 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 1224128 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 1224186 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 1224187 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAAC 1224245 : 119 c 119 C 1224246 C 1224246 ----endhit ----hitSequence: GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGAUAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.521008 ----pairStats: 34,0,4,0 hit 96 : 1223901 1224019 (fwd) 133.00 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::U::C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 1223901 GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 1223959 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G::A:: 1223960 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGAUAAC 1224018 : 119 c 119 C 1224019 C 1224019 ----endhit ----hitSequence: GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGAUAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.521008 ----pairStats: 34,0,4,0 hit 97 : 1223667 1223785 (fwd) 133.00 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::U::C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 1223667 GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 1223725 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G::A:: 1223726 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGAUAAC 1223784 : 119 c 119 C 1223785 C 1223785 ----endhit ----hitSequence: GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGAUAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.521008 ----pairStats: 34,0,4,0 hit 98 : 1223435 1223553 (fwd) 133.00 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::U::C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 1223435 GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 1223493 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G::A:: 1223494 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGAUAAC 1223552 : 119 c 119 C 1223553 C 1223553 ----endhit ----hitSequence: GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGAUAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.521008 ----pairStats: 34,0,4,0 hit 99 : 1223190 1223308 (fwd) 133.00 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::U::C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 1223190 GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 1223248 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G::A:: 1223249 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGAUAAC 1223307 : 119 c 119 C 1223308 C 1223308 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #786,emb|8254674| 268780 bp 12 contigs ----isReversed: 0 ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.537815 ----pairStats: 34,0,4,0 hit 100 : 252656 252774 (fwd) 135.36 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 252656 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 252714 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 252715 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAAC 252773 : 119 c 119 C 252774 C 252774 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #786,emb|8254674| 268780 bp 12 contigs ----isReversed: 1 ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.537815 ----pairStats: 34,0,4,0 hit 101 : 263139 263021 (rev) 135.36 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 5642 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 5700 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 5701 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAAC 5759 : 119 c 119 C 5760 C 5760 ----endhit ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.537815 ----pairStats: 34,0,4,0 hit 102 : 263403 263285 (rev) 135.36 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 5378 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 5436 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 5437 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAAC 5495 : 119 c 119 C 5496 C 5496 ----endhit ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.537815 ----pairStats: 34,0,4,0 hit 103 : 263668 263550 (rev) 135.36 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 5113 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 5171 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 5172 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAAC 5230 : 119 c 119 C 5231 C 5231 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #786,emb|8254674| 268780 bp 12 contigs ----isReversed: 1 ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.537815 ----pairStats: 34,0,4,0 hit 104 : 241563 241445 (rev) 135.36 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 27218 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 27276 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 27277 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAAC 27335 : 119 c 119 C 27336 C 27336 ----endhit ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.537815 ----pairStats: 34,0,4,0 hit 105 : 241826 241708 (rev) 135.36 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 26955 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 27013 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 27014 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAAC 27072 : 119 c 119 C 27073 C 27073 ----endhit ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAGCC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.546218 ----pairStats: 34,0,5,0 hit 106 : 242092 241974 (rev) 134.48 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 26689 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 26747 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 26748 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAGC 26806 : 119 c 119 C 26807 C 26807 ----endhit ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.537815 ----pairStats: 34,0,4,0 hit 107 : 242342 242224 (rev) 135.36 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 26439 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 26497 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 26498 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAAC 26556 : 119 c 119 C 26557 C 26557 ----endhit ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.537815 ----pairStats: 34,0,4,0 hit 108 : 242605 242487 (rev) 135.36 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 26176 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 26234 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 26235 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAAC 26293 : 119 c 119 C 26294 C 26294 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #786,emb|8254674| 268780 bp 12 contigs ----isReversed: 1 ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.537815 ----pairStats: 34,0,4,0 hit 109 : 216911 216793 (rev) 135.36 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 51870 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 51928 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 51929 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAAC 51987 : 119 c 119 C 51988 C 51988 ----endhit ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.537815 ----pairStats: 34,0,4,0 hit 110 : 217172 217054 (rev) 135.36 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 51609 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 51667 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 51668 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAAC 51726 : 119 c 119 C 51727 C 51727 ----endhit ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.537815 ----pairStats: 34,0,4,0 hit 111 : 217437 217319 (rev) 135.36 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 51344 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 51402 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 51403 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAAC 51461 : 119 c 119 C 51462 C 51462 ----endhit ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.537815 ----pairStats: 34,0,4,0 hit 112 : 217700 217582 (rev) 135.36 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 51081 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 51139 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 51140 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAAC 51198 : 119 c 119 C 51199 C 51199 ----endhit ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.537815 ----pairStats: 34,0,4,0 hit 113 : 217965 217847 (rev) 135.36 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 50816 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 50874 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 50875 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAAC 50933 : 119 c 119 C 50934 C 50934 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #842,emb|8254686| 541833 bp 6 contigs ----isReversed: 0 ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.537815 ----pairStats: 34,0,4,0 hit 114 : 230617 230735 (fwd) 135.36 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 230617 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 230675 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 230676 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAAC 230734 : 119 c 119 C 230735 C 230735 ----endhit ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.537815 ----pairStats: 34,0,4,0 hit 115 : 230342 230460 (fwd) 135.36 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 230342 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 230400 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 230401 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAAC 230459 : 119 c 119 C 230460 C 230460 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #842,emb|8254686| 541833 bp 6 contigs ----isReversed: 0 ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.537815 ----pairStats: 34,0,4,0 hit 116 : 230907 231025 (fwd) 135.36 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 230907 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 230965 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 230966 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAAC 231024 : 119 c 119 C 231025 C 231025 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #842,emb|8254686| 541833 bp 6 contigs ----isReversed: 0 ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.537815 ----pairStats: 34,0,4,0 hit 117 : 231468 231586 (fwd) 135.36 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 231468 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 231526 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 231527 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAAC 231585 : 119 c 119 C 231586 C 231586 ----endhit ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.537815 ----pairStats: 34,0,4,0 hit 118 : 231197 231315 (fwd) 135.36 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 231197 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 231255 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 231256 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAAC 231314 : 119 c 119 C 231315 C 231315 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #842,emb|8254686| 541833 bp 6 contigs ----isReversed: 0 ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.537815 ----pairStats: 34,0,4,0 hit 119 : 231752 231870 (fwd) 135.36 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 231752 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 231810 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 231811 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAAC 231869 : 119 c 119 C 231870 C 231870 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #876,emb|8254691| 686164 bp 4 contigs ----isReversed: 0 ----hitSequence: GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGAUAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.521008 ----pairStats: 34,0,4,0 hit 120 : 289605 289723 (fwd) 133.00 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::U::C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 289605 GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 289663 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G::A:: 289664 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGAUAAC 289722 : 119 c 119 C 289723 C 289723 ----endhit ----hitSequence: GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGAUAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.521008 ----pairStats: 34,0,4,0 hit 121 : 289357 289475 (fwd) 133.00 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::U::C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 289357 GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 289415 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G::A:: 289416 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGAUAAC 289474 : 119 c 119 C 289475 C 289475 ----endhit ----hitSequence: GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGAUAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.521008 ----pairStats: 34,0,4,0 hit 122 : 289110 289228 (fwd) 133.00 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::U::C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 289110 GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 289168 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G::A:: 289169 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGAUAAC 289227 : 119 c 119 C 289228 C 289228 ----endhit ----hitSequence: GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGAUAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.521008 ----pairStats: 34,0,4,0 hit 123 : 288867 288985 (fwd) 133.00 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::U::C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 288867 GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 288925 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G::A:: 288926 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGAUAAC 288984 : 119 c 119 C 288985 C 288985 ----endhit ----hitSequence: GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGAUAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.521008 ----pairStats: 34,0,4,0 hit 124 : 288626 288744 (fwd) 133.00 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::U::C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 288626 GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 288684 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G::A:: 288685 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGAUAAC 288743 : 119 c 119 C 288744 C 288744 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #876,emb|8254691| 686164 bp 4 contigs ----isReversed: 0 ----hitSequence: GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGAUAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.521008 ----pairStats: 34,0,4,0 hit 125 : 299877 299995 (fwd) 133.00 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::U::C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 299877 GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 299935 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G::A:: 299936 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGAUAAC 299994 : 119 c 119 C 299995 C 299995 ----endhit ----hitSequence: GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGAUAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.521008 ----pairStats: 34,0,4,0 hit 126 : 299635 299753 (fwd) 133.00 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::U::C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 299635 GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 299693 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G::A:: 299694 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGAUAAC 299752 : 119 c 119 C 299753 C 299753 ----endhit ----hitSequence: GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGAUAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.521008 ----pairStats: 34,0,4,0 hit 127 : 299393 299511 (fwd) 133.00 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::U::C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 299393 GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 299451 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G::A:: 299452 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGAUAAC 299510 : 119 c 119 C 299511 C 299511 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1170,emb|8254187| 311280 bp 2 contigs ----isReversed: 1 ----hitSequence: GCUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUAGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCUAGUGUCGACAGCC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.537815 ----pairStats: 34,0,4,0 hit 128 : 138690 138572 (rev) 133.97 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 :CUG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 172591 GCUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 172649 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC: ::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CAG: 172650 CUUAAGGCUAGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCUAGU-GUCGACAGC 172708 : 119 c 119 C 172709 C 172709 ----endhit ----hitSequence: GAUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAUCC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.537815 ----pairStats: 34,0,4,0 hit 129 : 138928 138810 (rev) 132.20 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 172353 GAUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 172411 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 172412 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAUC 172470 : 119 c 119 C 172471 C 172471 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1218,emb|8254346| 1638 bp 1 contigs ----isReversed: 1 ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.537815 ----pairStats: 34,0,4,0 hit 130 : 1353 1235 (rev) 135.36 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 286 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 344 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 345 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAAC 403 : 119 c 119 C 404 C 404 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1311,emb|8254373| 875719 bp 4 contigs ----isReversed: 0 ----hitSequence: GCUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGAUAGCC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.537815 ----pairStats: 34,0,4,0 hit 131 : 745313 745431 (fwd) 134.21 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 :CU::C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 745313 GCUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 745371 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G::AG: 745372 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGAUAGC 745430 : 119 c 119 C 745431 C 745431 ----endhit ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAGCC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.546218 ----pairStats: 34,0,5,0 hit 132 : 745066 745184 (fwd) 134.48 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 745066 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 745124 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 745125 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAGC 745183 : 119 c 119 C 745184 C 745184 ----endhit ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.537815 ----pairStats: 34,0,4,0 hit 133 : 744822 744940 (fwd) 135.36 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 744822 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 744880 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 744881 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAAC 744939 : 119 c 119 C 744940 C 744940 ----endhit ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.537815 ----pairStats: 34,0,4,0 hit 134 : 744588 744706 (fwd) 135.36 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 744588 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 744646 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 744647 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAAC 744705 : 119 c 119 C 744706 C 744706 ----endhit ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.537815 ----pairStats: 34,0,4,0 hit 135 : 744343 744461 (fwd) 135.36 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 744343 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 744401 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 744402 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAAC 744460 : 119 c 119 C 744461 C 744461 ----endhit ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCUGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.529412 ----pairStats: 34,0,5,0 hit 136 : 744107 744225 (fwd) 128.20 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC GAUCCCAU+C GAACUC GAAGUUAAGC:C 744107 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCUGAAGUUAAGCGC 744165 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 744166 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAAC 744224 : 119 c 119 C 744225 C 744225 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1311,emb|8254373| 875719 bp 4 contigs ----isReversed: 1 ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.537815 ----pairStats: 34,0,4,0 hit 137 : 809232 809114 (rev) 135.36 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 66488 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 66546 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 66547 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAAC 66605 : 119 c 119 C 66606 C 66606 ----endhit ----hitSequence: GCUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAGCC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.554622 ----pairStats: 34,0,4,0 hit 138 : 809487 809369 (rev) 136.58 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 :CUG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 66233 GCUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 66291 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CAG: 66292 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAGC 66350 : 119 c 119 C 66351 C 66351 ----endhit ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.537815 ----pairStats: 34,0,4,0 hit 139 : 809731 809613 (rev) 135.36 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 65989 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 66047 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 66048 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAAC 66106 : 119 c 119 C 66107 C 66107 ----endhit ----hitSequence: GCUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAGCC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.554622 ----pairStats: 34,0,4,0 hit 140 : 809977 809859 (rev) 136.58 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 :CUG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 65743 GCUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 65801 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CAG: 65802 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAGC 65860 : 119 c 119 C 65861 C 65861 ----endhit ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGUUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.529412 ----pairStats: 34,0,5,0 hit 141 : 810223 810105 (rev) 130.65 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 65497 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 65555 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::G::G::+U GUACU GGUGGG GACC+C UGGGAA :: ::U G::G:CA:: 65556 CUUAAGGUUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAAC 65614 : 119 c 119 C 65615 C 65615 ----endhit ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAGCC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.546218 ----pairStats: 34,0,5,0 hit 142 : 810487 810369 (rev) 134.48 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 65233 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 65291 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 65292 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAGC 65350 : 119 c 119 C 65351 C 65351 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1322,emb|8254379| 757155 bp 3 contigs ----isReversed: 1 ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.537815 ----pairStats: 34,0,4,0 hit 143 : 251186 251068 (rev) 135.36 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 505970 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 506028 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 506029 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAAC 506087 : 119 c 119 C 506088 C 506088 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1356,emb|8254385| 477791 bp 2 contigs ----isReversed: 0 ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.537815 ----pairStats: 34,0,4,0 hit 144 : 94139 94257 (fwd) 135.36 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 94139 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 94197 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 94198 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAAC 94256 : 119 c 119 C 94257 C 94257 ----endhit ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.537815 ----pairStats: 34,0,4,0 hit 145 : 93901 94019 (fwd) 135.36 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 93901 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 93959 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 93960 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAAC 94018 : 119 c 119 C 94019 C 94019 ----endhit ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.537815 ----pairStats: 34,0,4,0 hit 146 : 93656 93774 (fwd) 135.36 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 93656 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 93714 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 93715 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAAC 93773 : 119 c 119 C 93774 C 93774 ----endhit ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUUGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.529412 ----pairStats: 34,0,4,0 hit 147 : 93411 93529 (fwd) 133.07 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+ GAACUC:GAAGUUAAGC:C 93411 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUU-GAACUCCGAAGUUAAGCGC 93469 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 93470 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAAC 93528 : 119 c 119 C 93529 C 93529 ----endhit ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.537815 ----pairStats: 34,0,4,0 hit 148 : 93166 93284 (fwd) 135.36 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 93166 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 93224 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 93225 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAAC 93283 : 119 c 119 C 93284 C 93284 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1400,emb|8254397| 230559 bp 1 contigs ----isReversed: 1 ----hitSequence: GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGAUAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.521008 ----pairStats: 34,0,4,0 hit 149 : 173554 173436 (rev) 133.00 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::U::C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 57006 GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 57064 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G::A:: 57065 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGAUAAC 57123 : 119 c 119 C 57124 C 57124 ----endhit ----hitSequence: GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGAUAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.521008 ----pairStats: 34,0,4,0 hit 150 : 173796 173678 (rev) 133.00 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::U::C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 56764 GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 56822 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G::A:: 56823 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGAUAAC 56881 : 119 c 119 C 56882 C 56882 ----endhit ----hitSequence: GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGAUAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.521008 ----pairStats: 34,0,4,0 hit 151 : 174038 173920 (rev) 133.00 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::U::C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 56522 GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 56580 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G::A:: 56581 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGAUAAC 56639 : 119 c 119 C 56640 C 56640 ----endhit ----hitSequence: GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGAUAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.521008 ----pairStats: 34,0,4,0 hit 152 : 174281 174163 (rev) 133.00 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::U::C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 56279 GUUAUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 56337 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G::A:: 56338 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGAUAAC 56396 : 119 c 119 C 56397 C 56397 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1482,emb|8253908| 195107 bp 8 contigs ----isReversed: 1 ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.537815 ----pairStats: 34,0,4,0 hit 153 : 27218 27100 (rev) 135.36 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 167890 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 167948 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 167949 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAAC 168007 : 119 c 119 C 168008 C 168008 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1525,emb|8254572| 198165 bp 7 contigs ----isReversed: 0 ----hitSequence: UGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUAUAC ----ssRNAplot: (((..((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))). ----hitGC: 0.522124 ----pairStats: 34,4,5,0 hit 154 : 80885 80997 (fwd) 110.53 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 :+U CG:CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 80885 UGU--CGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 80941 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G: A+: 80942 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GU----AUA 80996 : 119 c 119 C 80997 C 80997 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1526,emb|8254718| 235511 bp 4 contigs ----isReversed: 0 ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.537815 ----pairStats: 34,0,4,0 hit 155 : 84163 84281 (fwd) 135.36 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 84163 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 84221 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 84222 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAAC 84280 : 119 c 119 C 84281 C 84281 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1526,emb|8254718| 235511 bp 4 contigs ----isReversed: 0 ----hitSequence: GCUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAGCC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.554622 ----pairStats: 34,0,4,0 hit 156 : 84737 84855 (fwd) 136.58 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 :CUG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 84737 GCUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 84795 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CAG: 84796 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAGC 84854 : 119 c 119 C 84855 C 84855 ----endhit ----hitSequence: GCUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAGCC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.554622 ----pairStats: 34,0,4,0 hit 157 : 84464 84582 (fwd) 136.58 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 :CUG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 84464 GCUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 84522 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CAG: 84523 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAGC 84581 : 119 c 119 C 84582 C 84582 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1526,emb|8254718| 235511 bp 4 contigs ----isReversed: 0 ----hitSequence: GCUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAGCC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.554622 ----pairStats: 34,0,4,0 hit 158 : 85023 85141 (fwd) 136.58 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 :CUG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 85023 GCUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 85081 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CAG: 85082 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAGC 85140 : 119 c 119 C 85141 C 85141 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1591,emb|8254588| 212214 bp 2 contigs ----isReversed: 1 ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.537815 ----pairStats: 34,0,4,0 hit 159 : 209838 209720 (rev) 135.36 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 2377 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 2435 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 2436 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAAC 2494 : 119 c 119 C 2495 C 2495 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1640,emb|8254597| 644724 bp 5 contigs ----isReversed: 0 ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.537815 ----pairStats: 34,0,4,0 hit 160 : 125697 125815 (fwd) 135.36 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 125697 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 125755 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 125756 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAAC 125814 : 119 c 119 C 125815 C 125815 ----endhit ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.537815 ----pairStats: 34,0,4,0 hit 161 : 125442 125560 (fwd) 135.36 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 125442 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 125500 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 125501 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAAC 125559 : 119 c 119 C 125560 C 125560 ----endhit ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.537815 ----pairStats: 34,0,4,0 hit 162 : 125188 125306 (fwd) 135.36 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 125188 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 125246 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 125247 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAAC 125305 : 119 c 119 C 125306 C 125306 ----endhit ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.537815 ----pairStats: 34,0,4,0 hit 163 : 124957 125075 (fwd) 135.36 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 124957 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 125015 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 125016 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAAC 125074 : 119 c 119 C 125075 C 125075 ----endhit ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.537815 ----pairStats: 34,0,4,0 hit 164 : 124703 124821 (fwd) 135.36 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 124703 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 124761 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 124762 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAAC 124820 : 119 c 119 C 124821 C 124821 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1642,emb|8254599| 80448 bp 6 contigs ----isReversed: 0 ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.537815 ----pairStats: 34,0,4,0 hit 165 : 24717 24835 (fwd) 135.36 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 24717 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 24775 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 24776 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAAC 24834 : 119 c 119 C 24835 C 24835 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1734,emb|8254763| 427219 bp 3 contigs ----isReversed: 0 ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.537815 ----pairStats: 34,0,4,0 hit 166 : 309463 309581 (fwd) 135.36 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 309463 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 309521 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 309522 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAAC 309580 : 119 c 119 C 309581 C 309581 ----endhit ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.537815 ----pairStats: 34,0,4,0 hit 167 : 309213 309331 (fwd) 135.36 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 309213 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 309271 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 309272 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAAC 309330 : 119 c 119 C 309331 C 309331 ----endhit ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.537815 ----pairStats: 34,0,4,0 hit 168 : 308957 309075 (fwd) 135.36 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 308957 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 309015 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 309016 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAAC 309074 : 119 c 119 C 309075 C 309075 ----endhit ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.537815 ----pairStats: 34,0,4,0 hit 169 : 308707 308825 (fwd) 135.36 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 308707 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 308765 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 308766 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAAC 308824 : 119 c 119 C 308825 C 308825 ----endhit ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.537815 ----pairStats: 34,0,4,0 hit 170 : 308450 308568 (fwd) 135.36 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 308450 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 308508 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 308509 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAAC 308567 : 119 c 119 C 308568 C 308568 ----endhit ----hitSequence: GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGACAACC ----ssRNAplot: (((((((((....((.(((((...((..((((((......))..))))..))....)))))..))(((.((....(.((.....((....)).....)).)..)).)))))))))))). ----hitGC: 0.537815 ----pairStats: 34,0,4,0 hit 171 : 308200 308318 (fwd) 135.36 bits (((((((((,,,,<<-<<<<<---<<--<<<<<<_______>>-->>>>-->>---->>> 1 ccugGCgGCCAUAGCGagggGGAAaCACCcGaUCCCAUCCCGAACuCgGAAGuUAAGCcc 60 ::UG:C::CCAUA::+AGG:G+AAACACC:GAUCCCAU+C GAACUC:GAAGUUAAGC:C 308200 GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC-GAACUCCGAAGUUAAGCGC 308258 >>-->><<<-<<--.-<-<<-----<<____>>----->>->.->>->>>,))))))))) 61 cucAGCGCCgAuGu.GUACUGcGGUGGGuGACCaCgUGGGAA.AgUAGGUCGCuGCcagg 118 CU+A::GC:G::+U GUACU GGUGGG GACC+C UGGGAA :: :GU G::G:CA:: 308259 CUUAAGGCUGGGUUaGUACUAAGGUGGGGGACCGCUUGGGAAgUCCCAGU-GUCGACAAC 308317 : 119 c 119 C 308318 C 308318 ----endhit Found 172 hits. done 2.08166e+08 nucs (frac lets thru so far=0.000216197332, 2d-fracLetsThru=0.000197227). Filter report: done 2.08166e+08 nucs (frac lets thru so far=0.00258870424, 2d-fracLetsThru=0.00143593). Filter report: done 538881 nucs (frac lets thru so far=0.558679931, 2d-fracLetsThru=0.582802). Filter report: done 301062 nucs (frac lets thru so far=0.22781354, 2d-fracLetsThru=0.307068). Filter report: done 68586 nucs (frac lets thru so far=0.687472662, 2d-fracLetsThru=0.791973). Filter report: done 47151 nucs (frac lets thru so far=0.954486649, 2d-fracLetsThru=0.969101). FULL: done 2.08166e+08 nucs (frac lets thru so far=0.000216197332, 2d-fracLetsThru=0.000197227). CPU time: 12922.84u 1.86s 03:35:24.70 Elapsed: 03:35:41 DONEdoneDONEdone