Params: release/cmzasha --no-stderr --filter 220 26 /home/kasiaw/Rfam_7.0/CM/RF00020.cm /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta 1 specfile /home/kasiaw/results/Tetrahymena_thermophila.fasta/RF00020_U5/RF00020_at26.filterspec 
Build: release
Host: node020
pid: 20786
---time: Mon Jul  4 05:27:09 2005

----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta
----specfile: hmm /home/kasiaw/Rfam_7.0_filters/RF00020_Saureus_compact.hmm hmm /home/kasiaw/Rfam_7.0_filters/RF00020_Saureus_expanded.hmm 2struct-str /home/kasiaw/Rfam_7.0_filters/RF00020_Saureus_expanded.hmm 1/remember-nuc,46,r-CGU_-A,45,r-CGU_-A,44,r-CGU_-A,84,l-ACGU-_,83,l-ACGU-_,82,l-ACG-U-_ 2struct-str /home/kasiaw/Rfam_7.0_filters/RF00020_Saureus_expanded.hmm 1/sub,79,69
----hmm-from-cmFileName: /home/kasiaw/Rfam_7.0/CM/RF00020.cm
----hmm-build-info: ;(default construction of HMM) Params: release/cmzasha --create-rigorous-filter 220 26 /home/kasiaw/Rfam_7.0/CM/RF00020.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec 	Build: release	Host: node023	pid: 5381	;Params: release/cmzasha --create-rigorous-filter 220 26 /home/kasiaw/Rfam_7.0/CM/RF00020.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec 	Build: release	Host: node023	pid: 5381	
----2struct-info: only-hmm
----hmm-from-cmFileName: /home/kasiaw/Rfam_7.0/CM/RF00020.cm
----hmm-build-info: ;(default construction of HMM) Params: release/cmzasha --create-rigorous-filter 220 26 /home/kasiaw/Rfam_7.0/CM/RF00020.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec 	Build: release	Host: node023	pid: 5381	;Params: release/cmzasha --create-rigorous-filter 220 26 /home/kasiaw/Rfam_7.0/CM/RF00020.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec 	Build: release	Host: node023	pid: 5381	
----2struct-info: only-hmm
Exploded HMM has 1344 states
----hmm-from-cmFileName: /home/kasiaw/Rfam_7.0/CM/RF00020.cm
----hmm-build-info: ;(default construction of HMM) Params: release/cmzasha --create-rigorous-filter 220 26 /home/kasiaw/Rfam_7.0/CM/RF00020.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec 	Build: release	Host: node023	pid: 5381	;Params: release/cmzasha --create-rigorous-filter 220 26 /home/kasiaw/Rfam_7.0/CM/RF00020.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec 	Build: release	Host: node023	pid: 5381	
----2struct-info: 1/remember-nuc,46,r-CGU_-A/remember-nuc,45,r-CGU_-A/remember-nuc,44,r-CGU_-A/remember-nuc,84,l-ACGU-_/remember-nuc,83,l-ACGU-_/remember-nuc,82,l-ACG-U-_
----hmm-from-cmFileName: /home/kasiaw/Rfam_7.0/CM/RF00020.cm
----hmm-build-info: ;(default construction of HMM) Params: release/cmzasha --create-rigorous-filter 220 26 /home/kasiaw/Rfam_7.0/CM/RF00020.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec 	Build: release	Host: node023	pid: 5381	;Params: release/cmzasha --create-rigorous-filter 220 26 /home/kasiaw/Rfam_7.0/CM/RF00020.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec 	Build: release	Host: node023	pid: 5381	
----2struct-info: 1/sub,79,69
----cmFile: /home/kasiaw/Rfam_7.0/CM/RF00020.cm (global)
----CM-scanning-logic: Infernal-0.55

----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta
----sequence: #680,emb|8254652| 611172 bp 7 contigs
----isReversed: 1
----hitSequence: AUCACAGAACUCAGCUCAUUACGCUUUAAUUUUUCGCCUUUUACUAAAGAUUACCGUGGGCUGGGUUUACCAAUGUGAAUUAUUAAAAUUUUUGCAGGAUUCUUUUGAAUCCU
----ssRNAplot:   ..((((.(((((((((((........((((((((...........))))))))...)))))))))))......))))..................(((((((....)))))))
----hitGC: 0.345133
----pairStats: 30,0,3,0
hit 0   : 482567 482455 (rev)    88.95 bits
           ::<<<<--<<<<<<<<<<<--------<<<<<<<<___________>>>>>>>>--->>>
         1 AuccacUGguuucucuuCAuAuCGAAUaAaUCUUUCGCCUUUUACUAAAGAuUuCCGUGg 60      
           AUC::: G:::UC:::UCAU +CG  U:AAU:UUUCGCCUUUUACUAAA:AUU:CCGUGG
    128606 AUCACA-GAACUCAGCUCAUUACGCUUUAAUUUUUCGCCUUUUACUAAAGAUUACCGUGG 128664  

           >>>>>>>>------>>>>--------.---------<-<<<<<<_______>>>>>>>
        61 agaggaacCAcuAaguggauUaucCc.AAUUUUUGGagggcuugUcUuUaGcaagccu 117     
           :::GG::: AC AA:::GA+U+++++ AAUUUUUG A GG:UU:U UUU  :AA:CCU
    128665 GCUGGGUUUACCAAUGUGAAUUAUUAaAAUUUUUGCA-GGAUUCU-UUU--GAAUCCU 128718  

----endhit

----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta
----sequence: #680,emb|8254652| 611172 bp 7 contigs
----isReversed: 1
----hitSequence: AUCACAGAACUCAGCUCAUUACGAUUUAAUUUUUCGCCUUUUACUAAAGAUUACCGUGAGCUGGGUUUUUCAAUGUGAAUUAUUAAAAUUUUUGCAGGAUUCUUUUGAAUCCU
----ssRNAplot:   ..((((.(((((((((((........((((((((...........))))))))...)))))))))))......))))..................(((((((....)))))))
----hitGC: 0.318584
----pairStats: 30,0,2,0
hit 1   : 481732 481620 (rev)    87.67 bits
           ::<<<<--<<<<<<<<<<<--------<<<<<<<<___________>>>>>>>>--->>>
         1 AuccacUGguuucucuuCAuAuCGAAUaAaUCUUUCGCCUUUUACUAAAGAuUuCCGUGg 60      
           AUC::: G:::UC:::+CAU +CGA U:AAU:UUUCGCCUUUUACUAAA:AUU:CCGUG+
    129441 AUCACA-GAACUCAGCUCAUUACGAUUUAAUUUUUCGCCUUUUACUAAAGAUUACCGUGA 129499  

           >>>>>>>>------>>>>--------.---------<-<<<<<<_______>>>>>>>
        61 agaggaacCAcuAaguggauUaucCc.AAUUUUUGGagggcuugUcUuUaGcaagccu 117     
           :::GG:::  + AA:::GA+U+++++ AAUUUUUG A GG:UU:U UUU  :AA:CCU
    129500 GCUGGGUUUUUCAAUGUGAAUUAUUAaAAUUUUUGCA-GGAUUCU-UUU--GAAUCCU 129553  

----endhit

Found 2 hits.

done 2.08166e+08 nucs (frac lets thru so far=0.00163505808, 2d-fracLetsThru=0.000835772).
Filter report: done 2.08166e+08 nucs (frac lets thru so far=0.216494052, 2d-fracLetsThru=0.127111).
Filter report: done 4.50668e+07 nucs (frac lets thru so far=0.0826009995, 2d-fracLetsThru=0.0730601).
Filter report: done 3.72256e+06 nucs (frac lets thru so far=0.33533348, 2d-fracLetsThru=0.332137).
Filter report: done 1.2483e+06 nucs (frac lets thru so far=0.272662239, 2d-fracLetsThru=0.270962).

FULL: done 2.08166e+08 nucs (frac lets thru so far=0.00163505808, 2d-fracLetsThru=0.000835772).

CPU time: 8599.18u 2.79s 02:23:21.97 Elapsed: 02:23:36
DONEdoneDONEdone