Params: release/cmzasha --no-stderr --filter 200 40 /home/kasiaw/Rfam_7.0/CM/RF00025.cm /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta 1 specfile /home/kasiaw/results/Tetrahymena_thermophila.fasta/RF00025_Telomerase-cil/RF00025_at40.filterspec 
Build: release
Host: node002
pid: 7393
---time: Mon Jul  4 05:27:08 2005

----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta
----specfile: hmm /home/kasiaw/Rfam_7.0_filters/RF00025_Saureus_compact.hmm
----hmm-from-cmFileName: /home/kasiaw/Rfam_7.0/CM/RF00025.cm
----hmm-build-info: ;(default construction of HMM) Params: release/cmzasha --create-rigorous-filter 200 40 /home/kasiaw/Rfam_7.0/CM/RF00025.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec 	Build: release	Host: node006	pid: 17609	;Params: release/cmzasha --create-rigorous-filter 200 40 /home/kasiaw/Rfam_7.0/CM/RF00025.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec 	Build: release	Host: node006	pid: 17609	
----2struct-info: only-hmm
----cmFile: /home/kasiaw/Rfam_7.0/CM/RF00025.cm (global)
----CM-scanning-logic: Infernal-0.55

----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta
----sequence: #1617,emb|8254736| 272088 bp 4 contigs
----isReversed: 0
----hitSequence: AUACCCGCUUAAUUCAUUCAGAUCUGUAAUAGAACUGUCAUUCAACCCCAAAAAUCUAGUGCUGAUAUAACCUUCACCAAUUAGGUUCAAAUAAGUGGUAAUGCGGGACAAAAGACUAUCGACAUUUGAUACACUAUUUAUCAAUGGAUGUCUUAUUUUU
----ssRNAplot:   ...(((((..........(((.(((.....))).)))......................................((((((((........))))))))...)))))....(((((.(((..(((.(((((.......))))))))))))))))......
----hitGC: 0.3375
----pairStats: 35,0,0,1
hit 0   : 213646 213805 (fwd)   129.48 bits
           :::(((((.,,,,,,,,,<<<-<<<_____>>>->>>,,,,,,,,,,,,,,,,,,,,,,,
         1 AUacccgc.aAAUuCAUUCagaucugaaAUagaacuGUCAUUCAACCCCAAAAAUCUAGu 59      
           AUACCCGC  AAUUCAUUCAGAUCUG+AAUAGAACUGUCAUUCAACCCCAAAAAUCUAGU
    213646 AUACCCGCuUAAUUCAUUCAGAUCUGUAAUAGAACUGUCAUUCAACCCCAAAAAUCUAGU 213705  

           ,,,,,,,,,,,,,,,<<<<<<<<__________>>>>>>>>,,,)))))---.<<<<<-<
        60 aCAAAUAuuGccUUcgccuguuuGGuaAAguAAaaacaggaAaugcgggACu.aagagua 118     
           +C++AUAU  CCUUC:CC::UU:GGU   ++AA:AA::GG:AAUGCGGGAC+ AAGA:UA
    213706 GCUGAUAUAACCUUCACCAAUUAGGUU--CAAAUAAGUGGUAAUGCGGGACAaAAGACUA 213763  

           <<--<<<-<<<<<________>>>>>>>>>>>>>>>>::::::
       119 ucGAcauUugauaAcAcUAUUuaucaauggaucucuuauUUUU 161     
           UCGACAUUUGAUA CACUAUUUAUCAAUGGAU:UCUUAUUUUU
    213764 UCGACAUUUGAUA-CACUAUUUAUCAAUGGAUGUCUUAUUUUU 213805  

----endhit

Found 1 hits.

done 2.08166e+08 nucs (frac lets thru so far=4.04484288e-06, 2d-fracLetsThru=3.57359e-06).
Filter report: done 2.08166e+08 nucs (frac lets thru so far=4.04484288e-06, 2d-fracLetsThru=3.57359e-06).

FULL: done 2.08166e+08 nucs (frac lets thru so far=4.04484288e-06, 2d-fracLetsThru=3.57359e-06).

CPU time: 7522.32u 0.74s 02:05:23.05 Elapsed: 02:05:35
DONEdoneDONEdone