Params: release/cmzasha --no-stderr --filter 200 62.9 /home/kasiaw/Rfam_7.0/CM/RF00026.cm /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta 1 specfile /home/kasiaw/results/Tetrahymena_thermophila.fasta/RF00026_U6/RF00026_at62.9.filterspec 
Build: release
Host: node006
pid: 4249
---time: Mon Jul  4 05:27:08 2005

----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta
----specfile: hmm /home/kasiaw/Rfam_7.0_filters/RF00026_Saureus_compact.hmm
----hmm-from-cmFileName: /home/kasiaw/Rfam_7.0/CM/RF00026.cm
----hmm-build-info: ;(default construction of HMM) Params: release/cmzasha --create-rigorous-filter 200 62.9 /home/kasiaw/Rfam_7.0/CM/RF00026.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec 	Build: release	Host: cs011	pid: 11375	;Params: release/cmzasha --create-rigorous-filter 200 62.9 /home/kasiaw/Rfam_7.0/CM/RF00026.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec 	Build: release	Host: cs011	pid: 11375	
----2struct-info: only-hmm
----cmFile: /home/kasiaw/Rfam_7.0/CM/RF00026.cm (global)
----CM-scanning-logic: Infernal-0.55

----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta
----sequence: #893,emb|8253894| 215179 bp 2 contigs
----isReversed: 1
----hitSequence: AACCCGAAAGGGUCAUCCGUUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCGAAGGAUGACACGCUCAAAGCGAGAAGGAUUCCCCAUUUUU
----ssRNAplot:   (((((....)))))..........................................................................................
----hitGC: 0.480769
----pairStats: 5,0,0,1
hit 0   :  91780  91677 (rev)   111.18 bits
           <<<<<____>>>>>::::::::::::::::::::::::::::::::::::::::::::::
         1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60      
           ::CCC    GGG::AUC+G UAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG
    123400 AACCCGAAAGGGUCAUCCGUUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 123459  

           :::.::::::::::::::::::.:::::::::::::::::::::
        61 CGC.AAGGAUGACACGcauAaU.CGAGAaaUgUUCCaaaUUUUU 102     
           CGC AAGGAUGACACGC+ AA+ CGAGAA+ +UUCC+ AUUUUU
    123460 CGCgAAGGAUGACACGCUCAAAgCGAGAAGGAUUCCCCAUUUUU 123503  

----endhit

----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta
----sequence: #893,emb|8253894| 215179 bp 2 contigs
----isReversed: 1
----hitSequence: GCCCGAAAGGGCAUCUGUUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCGAAGGAUGACACGCUCAAAGCGAGAAGGAUUCCCCAUUUUU
----ssRNAplot:   (((((..)))))..........................................................................................
----hitGC: 0.490196
----pairStats: 5,0,0,1
hit 1   :  90524  90423 (rev)   109.67 bits
           <<<<<____>>>>>::::::::::::::::::::::::::::::::::::::::::::::
         1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60      
           G:CC      GG:CAUCUG UAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG
    124656 GCCCG-AA-AGGGCAUCUGUUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 124713  

           :::.::::::::::::::::::.:::::::::::::::::::::
        61 CGC.AAGGAUGACACGcauAaU.CGAGAaaUgUUCCaaaUUUUU 102     
           CGC AAGGAUGACACGC+ AA+ CGAGAA+ +UUCC+ AUUUUU
    124714 CGCgAAGGAUGACACGCUCAAAgCGAGAAGGAUUCCCCAUUUUU 124757  

----endhit

----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta
----sequence: #893,emb|8253894| 215179 bp 2 contigs
----isReversed: 1
----hitSequence: AACCCGAAAGGGUCAUCCGUUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCGAAGGAUGACACGCUCAAAGCGAGAAGGAUUCCCCAUUUUU
----ssRNAplot:   (((((....)))))..........................................................................................
----hitGC: 0.480769
----pairStats: 5,0,0,1
hit 2   :  89347  89244 (rev)   111.18 bits
           <<<<<____>>>>>::::::::::::::::::::::::::::::::::::::::::::::
         1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60      
           ::CCC    GGG::AUC+G UAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG
    125833 AACCCGAAAGGGUCAUCCGUUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 125892  

           :::.::::::::::::::::::.:::::::::::::::::::::
        61 CGC.AAGGAUGACACGcauAaU.CGAGAaaUgUUCCaaaUUUUU 102     
           CGC AAGGAUGACACGC+ AA+ CGAGAA+ +UUCC+ AUUUUU
    125893 CGCgAAGGAUGACACGCUCAAAgCGAGAAGGAUUCCCCAUUUUU 125936  

----endhit

----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta
----sequence: #893,emb|8253894| 215179 bp 2 contigs
----isReversed: 1
----hitSequence: AACCCGAAAGGGUCAUCCGUUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCGCGAAGGAUGACACGCUCAAAGCGAGAAGGAUUCCCCAUUUUU
----ssRNAplot:   (((((....)))))..........................................................................................
----hitGC: 0.480769
----pairStats: 5,0,0,1
hit 3   :  88976  88873 (rev)   111.18 bits
           <<<<<____>>>>>::::::::::::::::::::::::::::::::::::::::::::::
         1 GucCcUUCGgGgaCAUcUgcUAAAAUUGGAACgAUACAGAGAAGAUUAGCAUGGCCCCUG 60      
           ::CCC    GGG::AUC+G UAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG
    126204 AACCCGAAAGGGUCAUCCGUUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGCCCCUG 126263  

           :::.::::::::::::::::::.:::::::::::::::::::::
        61 CGC.AAGGAUGACACGcauAaU.CGAGAaaUgUUCCaaaUUUUU 102     
           CGC AAGGAUGACACGC+ AA+ CGAGAA+ +UUCC+ AUUUUU
    126264 CGCgAAGGAUGACACGCUCAAAgCGAGAAGGAUUCCCCAUUUUU 126307  

----endhit

Found 4 hits.

done 2.08166e+08 nucs (frac lets thru so far=6.07687202e-06, 2d-fracLetsThru=4.17277e-06).
Filter report: done 2.08166e+08 nucs (frac lets thru so far=6.07687202e-06, 2d-fracLetsThru=4.17277e-06).

FULL: done 2.08166e+08 nucs (frac lets thru so far=6.07687202e-06, 2d-fracLetsThru=4.17277e-06).

CPU time: 4934.93u 2.52s 01:22:17.45 Elapsed: 01:22:33
DONEdoneDONEdone