Params: release/cmzasha --no-stderr --filter 100 13.85 /home/kasiaw/Rfam_7.0/CM/RF00031.cm /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta 1 specfile /home/kasiaw/results/Tetrahymena_thermophila.fasta/RF00031_SECIS/RF00031_at13.85.filterspec Build: release Host: node004 pid: 16421 ---time: Mon Jul 4 05:27:08 2005 ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----specfile: 2struct-str /home/kasiaw/Rfam_7.0_filters/RF00031_Saureus_expanded.hmm 1/sub,23,75 2struct-str /home/kasiaw/Rfam_7.0_filters/RF00031_Saureus_expanded.hmm 1/sub,19,88 ----hmm-from-cmFileName: /home/kasiaw/Rfam_7.0/CM/RF00031.cm ----hmm-build-info: ;(default construction of HMM) Params: release/cmzasha --create-rigorous-filter 100 13.85 /home/kasiaw/Rfam_7.0/CM/RF00031.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec Build: release Host: node020 pid: 22452 ;Params: release/cmzasha --create-rigorous-filter 100 13.85 /home/kasiaw/Rfam_7.0/CM/RF00031.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec Build: release Host: node020 pid: 22452 ----2struct-info: 1/sub,23,75 ----hmm-from-cmFileName: /home/kasiaw/Rfam_7.0/CM/RF00031.cm ----hmm-build-info: ;(default construction of HMM) Params: release/cmzasha --create-rigorous-filter 100 13.85 /home/kasiaw/Rfam_7.0/CM/RF00031.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec Build: release Host: node020 pid: 22452 ;Params: release/cmzasha --create-rigorous-filter 100 13.85 /home/kasiaw/Rfam_7.0/CM/RF00031.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec Build: release Host: node020 pid: 22452 ----2struct-info: 1/sub,19,88 ----cmFile: /home/kasiaw/Rfam_7.0/CM/RF00031.cm (global) ----CM-scanning-logic: Infernal-0.55 ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #14,emb|8254028| 344051 bp 2 contigs ----isReversed: 1 ----hitSequence: UUUUUAACAUUAGUAAAAAGGAUAAAAAAUUUUUAAUUUUCUUUUUUAAGCUUUUGGAAAAA ----ssRNAplot: (((((....((((((((((((((.....(((...))).)))))))))))))).....))))) ----hitGC: 0.145161 ----pairStats: 22,0,1,5 hit 0 : 177185 177124 (rev) 15.11 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___>>>->>>>>>>>>>>>>>-----.> 1 gucucuuuuAUGAuGaccucagccuAAAccccucugggcggcugagguCuGAUgccug.g 59 :U:U:+ + AU:A A:::: G: AAA :::U+U:::+ :C ::::U G:U +UG : 166867 UUUUUAAC-AUUAGUAAAAAGGAUAAAAAAUUUUUAAUUUUCUUUUUUAAGCU-UUUGgA 166924 >>>> 60 agac 63 A:A: 166925 AAAA 166928 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #67,emb|8254051| 162284 bp 4 contigs ----isReversed: 0 ----hitSequence: GCUUUUUAUUGAUAAGAAAAUUGUAAAAAUUUUUGAAUGAUGCUAGAUUUUUUUGAUCUAGUAAAUC ----ssRNAplot: (((((....((((((((((((((.....(((....))).....)))))))))))))).....))))) ----hitGC: 0.208955 ----pairStats: 22,0,3,6 hit 1 : 89858 89924 (fwd) 16.72 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___.>>>.-...>>>>>>>>>>>>>>-- 1 gucucuuuuAUGAuGaccucagccuAAAccccucu.ggg.c...ggcugagguCuGAUgc 55 G::U:UU UGAU:A:::: :: UAAA :::U+U ::: :: ::::U:UGAU C 89858 GCUUUUUA-UUGAUAAGAAAAUUGUAAAAAUUUUUgAAUgAugcUAGAUUUUUUUGAU-C 89915 ---.>>>>> 56 cug.gagac 63 + G :A::C 89916 UAGuAAAUC 89924 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #153,emb|8254222| 20223 bp 1 contigs ----isReversed: 0 ----hitSequence: CAUUGAUUUAUUAAUAUUUUUUUUCAAAUUUUUUAAAUAAAGUAAAUUCAGAUGGAUUUAAAAUG ----ssRNAplot: (((((.....((((((((((((((.....(((..)))..)))))))))))))).......))))) ----hitGC: 0.138462 ----pairStats: 22,0,1,7 hit 2 : 16894 16958 (fwd) 14.03 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___>>>-.>>>>>>>>>>>>>>.----- 1 gucucuuuuAUGAuGaccucagccuAAAccccucugggc.ggcugagguCuGAU.gccug 58 :::U +UUUAU:A: A :U:+::: AAA+:::U+ :::+ :::+:A: U :G:U G +U+ 16894 CAUUGAUUUAUUAAUAUUUUUUUUCAAAUUUUUU-AAAUaAAGUAAAUUCAGAUgGAUUU 16952 .>>>>> 59 .gagac 63 A::: 16953 aAAAUG 16958 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #211,emb|8254241| 107418 bp 2 contigs ----isReversed: 0 ----hitSequence: UUGUGAAAUGAAAUUACUAAAUAAAAAUUUUAAUAAUUAGUUAUAGAUGCUUACACAA ----ssRNAplot: (((((...((((((((((((((....(((..))))))))))))))))).....))))) ----hitGC: 0.172414 ----pairStats: 22,0,0,6 hit 3 : 12575 12632 (fwd) 17.54 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___>>>->>>>>>>>>>>>>>-----.> 1 gucucuuuuAUGAuGaccucagccuAAAccccucugggcggcugagguCuGAUgccug.g 59 :U:U: AUGA::: :::A: : AAA :::U+ ::: : :U::: :::GAU +CU+ : 12575 UUGUG-AA-AUGAAAUUACUAAAUAAAA-AUUUU-AAU-AAUUAGUUAUAGAU-GCUUaC 12628 >>>> 60 agac 63 A:A: 12629 ACAA 12632 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #255,emb|8254403| 526382 bp 2 contigs ----isReversed: 1 ----hitSequence: UAUUUAUUAUAACAAUUUUAAAAUAAAAAAAUUAAUUUAAGUUUAAAUUUGGGUUGCUUAAAUUA ----ssRNAplot: (((((....((((((((((((((.....(((....)))..))))))))))))))......))))) ----hitGC: 0.107692 ----pairStats: 22,0,0,6 hit 4 : 203775 203711 (rev) 16.23 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___.>>>-.>>>>>>>>>>>>>>----- 1 gucucuuuuAUGAuGaccucagccuAAAccccucu.gggc.ggcugagguCuGAUgccug 58 :::U:+UU AU A :A :U:A:::UAAA :::U++ ::: :::U:A: U: G U +CU+ 322608 UAUUUAUU-AUAACAAUUUUAAAAUAAAAAAAUUAaUUUAaGUUUAAAUUUGGGUUGCUU 322666 .>>>>> 59 .gagac 63 :A::: 322667 aAAUUA 322672 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #255,emb|8254403| 526382 bp 2 contigs ----isReversed: 1 ----hitSequence: AGUUUUCUAUUUUAAAAGAUUCUUAAAUCUUUUAGAUAGGACUUUUUUGAUCCCUAAUUU ----ssRNAplot: (((((....((((((((((((((....(((...))).))))))))))))))....))))) ----hitGC: 0.216667 ----pairStats: 22,0,4,4 hit 5 : 48231 48172 (rev) 14.07 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___>>>-.>>>>>>>>>>>>>>-----> 1 gucucuuuuAUGAuGaccucagccuAAAccccucugggc.ggcugagguCuGAUgccugg 59 : :U:U U AU::U:A:: :::C:UAAA :C:U+U:G: :G::: ::U:U::U CC++: 478152 AGUUUUCU-AUUUUAAAAGAUUCUUAAA-UCUUUUAGA-uAGGACUUUUUUGAU-CCCUA 478207 >>>> 60 agac 63 A: : 478208 AUUU 478211 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #351,emb|8254428| 470161 bp 2 contigs ----isReversed: 0 ----hitSequence: AUCUUAACAUGAUUUGCUUCUAUUAAAUUUCUGAUGAAAGAUAGCAGCAUUGAAUUUUAAUAU ----ssRNAplot: (((((....((((((((((((((.....(((....)))..))))))))))))))....))))) ----hitGC: 0.238095 ----pairStats: 22,0,0,6 hit 6 : 154189 154251 (fwd) 15.24 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___.>>>-.>>>>>>>>>>>>>>----- 1 gucucuuuuAUGAuGaccucagccuAAAccccucu.gggc.ggcugagguCuGAUgccug 58 :U U:+ + A+GAU : CU ::::UAAA+::CU + G:: :::: AG : UGA+ +U+ 154189 AUCUUAAC-AUGAUUUGCUUCUAUUAAAUUUCUGAuGAAAgAUAGCAGCAUUGAA-UUUU 154246 >>>>> 59 gagac 63 :A A: 154247 AAUAU 154251 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #351,emb|8254428| 470161 bp 2 contigs ----isReversed: 1 ----hitSequence: UAUUUAUCAUGAUAAGUAUUACAUAAAUUAUAUCUGAUUCUUGCUAUUAUGAUGAUUCUUAAGA ----ssRNAplot: (((((....((((((((((((((......(((...))).))))))))))))))......))))) ----hitGC: 0.203125 ----pairStats: 22,0,2,11 hit 7 : 275631 275568 (rev) 13.93 bits <<<<<-----<<<<<<<<<<<<<<----.-<<<___>>>->>>>>>>>>>>>>>.----- 1 gucucuuuuAUGAuGaccucagccuAAA.ccccucugggcggcugagguCuGAU.gccug 58 :::U +U+ AUGAU:A::: +: :UAAA +:: UCU ::+: :+ :::U:UGAU + +++ 194531 UAUUUAUC-AUGAUAAGUAUUACAUAAAuUAUAUCUGAUUCUUGCUAUUAUGAUgAUUCU 194589 >>>>> 59 gagac 63 A::: 194590 UAAGA 194594 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #351,emb|8254428| 470161 bp 2 contigs ----isReversed: 1 ----hitSequence: UUUUGUUUUAUGUUAAAGAAAUUUUAAAUCACAAAUCUAAAUAAUUUUUUCUUAUUUUUGAAAG ----ssRNAplot: (((((.....((((((((((((((.....(((....)))..))))))))))))))....))))) ----hitGC: 0.140625 ----pairStats: 22,0,2,9 hit 8 : 254892 254829 (rev) 14.56 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___.>>>-.>>>>>>>>>>>>>>----- 1 gucucuuuuAUGAuGaccucagccuAAAccccucu.gggc.ggcugagguCuGAUgccug 58 U:U+UUUUAUG:U:A: ::A:: UAAA+ : + : ::U:: :U:U:AU +U+ 215270 UUUUGUUUUAUGUUAAAGAAAUUUUAAAUCACAAAuCUAAaUAAUUUUUUCUUAU-UUUU 215328 >>>>> 59 gagac 63 +A:A 215329 GAAAG 215333 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #371,emb|8254431| 715652 bp 1 contigs ----isReversed: 0 ----hitSequence: UUUUUUCUAAAAUAAUUUCAAUUCAAAAAUUAAUUAAUUAAUUAAAGUCUGAUGUUUAAAAA ----ssRNAplot: (((((....((((((((((((((.....(((....))).))))))))))))))....))))) ----hitGC: 0.112903 ----pairStats: 22,0,1,5 hit 9 : 1103 1164 (fwd) 17.19 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___.>>>->>>>>>>>>>>>>>-----> 1 gucucuuuuAUGAuGaccucagccuAAAccccucu.gggcggcugagguCuGAUgccugg 59 :U:U:U U A: AU:A::U A::: AAA ::: U :::+:::U A::U:UG : ++U+: 1103 UUUUUUCU-AAAAUAAUUUCAAUUCAAAAAUUAAUuAAUUAAUUAAAGUCUGAU-GUUUA 1160 >>>> 60 agac 63 A:A: 1161 AAAA 1164 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #381,emb|8254435| 356818 bp 1 contigs ----isReversed: 0 ----hitSequence: UUUGAAUUCAAUGAAGUAAAUUUUUUUAACAUUUUAGAAAUUAAAGAUUUUUUGAAAAUUUUAUAAA ----ssRNAplot: (((((......((((((((((((((.....(((.....))).))))))))))))))......))))) ----hitGC: 0.119403 ----pairStats: 22,0,3,4 hit 10 : 162125 162191 (fwd) 15.04 bits <<<<<---.--<<<<<<<<<<<<<<-----<<<___..>>>->>>>>>>>>>>>>>.--- 1 gucucuuu.uAUGAuGaccucagccuAAAccccucu..gggcggcugagguCuGAU.gcc 56 :U:: +UU A+GA:: ::::+:::U AAC:::U++ :::+:::+:::: ::GA+ + + 162125 UUUGAAUUcAAUGAAGUAAAUUUUUUUAACAUUUUAgaAAUUAAAGAUUUUUUGAAaAUU 162184 -->>>>> 57 uggagac 63 U+ ::A: 162185 UUAUAAA 162191 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #381,emb|8254435| 356818 bp 1 contigs ----isReversed: 1 ----hitSequence: UUUUUAUCAUUUGUUGAAAAUUUAUUAAAUAUUUUACAUAAUCAAUUUGCUGAUUUAUAAAAA ----ssRNAplot: (((((......((((((((((((((.....(((...))).))))))))))))))....))))) ----hitGC: 0.126984 ----pairStats: 22,0,1,6 hit 11 : 89067 89005 (rev) 17.92 bits <<<<<---.--<<<<<<<<<<<<<<-----<<<___>>>->>>>>>>>>>>>>>-----> 1 gucucuuu.uAUGAuGaccucagccuAAAccccucugggcggcugagguCuGAUgccugg 59 :U:U:+U+ U UG:UG ::::: ::UAAA+:::U++::: :: ::::: CU:AU + +: 267752 UUUUUAUCaUUUGUUGAAAAUUUAUUAAAUAUUUUACAUAAUCAAUUUGCUGAU-UUAUA 267810 >>>> 60 agac 63 A:A: 267811 AAAA 267814 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #388,emb|8254437| 547543 bp 2 contigs ----isReversed: 0 ----hitSequence: UUUUUAUUAAGAAAACUUUUUUCUAAAAUAUCUUUAGAAAAAGUUACAUCUUGCAAUAA ----ssRNAplot: (((((....((((((((((((((....(((..))))))))))))))))).....))))) ----hitGC: 0.169492 ----pairStats: 22,0,1,6 hit 12 : 275956 276014 (fwd) 15.42 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___>>>->>>>>>>>>>>>>>-----.> 1 gucucuuuuAUGAuGaccucagccuAAAccccucugggcggcugagguCuGAUgccug.g 59 :U:U:+UU A:G ::AC:U:::: UAAA : :UC : : ::::A:GU:: A: C+UG : 275956 UUUUUAUU-AAGAAAACUUUUUUCUAAA-AUAUC-UUU-AGAAAAAGUUACAU-CUUGcA 276010 >>>> 60 agac 63 A:A: 276011 AUAA 276014 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #388,emb|8254437| 547543 bp 2 contigs ----isReversed: 1 ----hitSequence: GAUUUAUUUAAUGAAGAAAACUAUUUAAAUAUCUAAUAAGUAGACUUAUUAGGCUUAAAUC ----ssRNAplot: (((((......((((((((((((((....(((...)))))))))))))))))....))))) ----hitGC: 0.196721 ----pairStats: 22,0,2,4 hit 13 : 162734 162674 (rev) 14.92 bits <<<<<---.--<<<<<<<<<<<<<<-----<<<___>>>->>>>>>>>>>>>>>-----> 1 gucucuuu.uAUGAuGaccucagccuAAAccccucugggcggcugagguCuGAUgccugg 59 G::U:+UU A+G : A: C::::UAAA :::+++::: ::::G :U : A+ +CU+: 384810 GAUUUAUUuAAUGAAGAAAACUAUUUAAA-UAUCUAAUA-AGUAGACUUAUUAG-GCUUA 384866 >>>> 60 agac 63 A::C 384867 AAUC 384870 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #421,emb|8254446| 515732 bp 2 contigs ----isReversed: 1 ----hitSequence: UUUUUGUUUUAUCAAAGCAAAAUUAAAAUUUUCAUAAUAUUUUAUGUUUGAUUUUUAAAAA ----ssRNAplot: (((((......((((((((((((....(((.....)))))))..))))))))....))))) ----hitGC: 0.114754 ----pairStats: 22,2,1,3 hit 14 : 237326 237266 (rev) 14.00 bits <<<<<---.--<<<<<<<<<<<<<<-----<<<___..>>>->>>>>>>>>>>>>>---- 1 gucucuuu.uAUGAuGaccucagccuAAAccccucu..gggcggcugagguCuGAUgccu 57 :U:U: UU UAU:A:::C: A:::UAAA :::U++ ::: :::U A:G:::G:U +U 278407 UUUUUGUUuUAUCAAAGCA--AAAUUAAA-AUUUUCauAAU-AUUUUAUGUUUGAU-UUU 278461 ->>>>> 58 ggagac 63 +:A:A: 278462 UAAAAA 278467 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #425,emb|8254449| 251867 bp 1 contigs ----isReversed: 0 ----hitSequence: UUUAUAUCUAGGUUAACUAAAUCUAAAGAAUAUUUAUUUGAUUUUUUUUAAUGUUUGAUAAA ----ssRNAplot: (((((.....(((((((((((((.....(((....))).))))))))))))).....))))) ----hitGC: 0.145161 ----pairStats: 22,1,1,4 hit 15 : 108470 108531 (fwd) 14.93 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___.>>>->>>>>>>>>>>>>>-----> 1 gucucuuuuAUGAuGaccucagccuAAAccccucu.gggcggcugagguCuGAUgccugg 59 :U:::+U+UA:G:U:A : :A::CUAAA+::: +U :::+G::U: : U:U:A:G +UG: 108470 UUUAUAUCUAGGUUAA-CUAAAUCUAAAGAAUAUUuAUUUGAUUUUU-UUUAAUGUUUGA 108527 >>>> 60 agac 63 ::A: 108528 UAAA 108531 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #437,emb|8254454| 99508 bp 1 contigs ----isReversed: 0 ----hitSequence: AUUAAAUUAAUGAGGAACUUAAUUAAAAAAUUACAUAAGUUACUUACUGAUUUUAUUUUAU ----ssRNAplot: (((((.....((((((((((((((....(((...))))))))))))))))).....))))) ----hitGC: 0.147541 ----pairStats: 22,0,2,8 hit 16 : 49667 49727 (fwd) 13.89 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___>>>->>>>>>>>>>>>>>----->> 1 gucucuuuuAUGAuGaccucagccuAAAccccucugggcggcugagguCuGAUgccugga 60 :U:::+UU AUGA:G :: :A::: AAA ::U +:: :::U: :: C:GAU + +:: 49667 AUUAAAUUAAUGAGGAACUUAAUUAAAA-AAUUACAUA-AGUUACUUACUGAUUUUAUUU 49724 >>> 61 gac 63 :A: 49725 UAU 49727 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #441,emb|8254456| 75921 bp 1 contigs ----isReversed: 0 ----hitSequence: CUUUGACUAAGAAAUUAAUUAAUUAAACACACCAAUUAGUUAAUUAAUUUAAUAACAAACAAAG ----ssRNAplot: (((((....((((((((((((((.....(((...))).)))))))))))))).......))))) ----hitGC: 0.1875 ----pairStats: 22,0,1,4 hit 17 : 58895 58958 (fwd) 14.31 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___>>>->>>>>>>>>>>>>>.-----. 1 gucucuuuuAUGAuGaccucagccuAAAccccucugggcggcugagguCuGAU.gccug. 58 :U:U:+ U A:G :::::::::::UAAAC:: +C+ :: ::::::::::: A: + C 58895 CUUUGACU-AAGAAAUUAAUUAAUUAAACACACCAAUUAGUUAAUUAAUUUAAuAACAAa 58953 >>>>> 59 gagac 63 :A:A: 58954 CAAAG 58958 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #445,emb|8254459| 486561 bp 1 contigs ----isReversed: 1 ----hitSequence: UAGAUUGUUACAAUAAUUACUUAUUAAAUCCAGCUCUAGUUAUCAGUAAUUUGAAACCAGAUGAA ----ssRNAplot: (((((.....((((((((((((((.....(((....)))..)))))))))))))).....))))) ----hitGC: 0.261538 ----pairStats: 22,0,0,8 hit 18 : 435500 435436 (rev) 14.56 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___.>>>-.>>>>>>>>>>>>>>----- 1 gucucuuuuAUGAuGaccucagccuAAAccccucu.gggc.ggcugagguCuGAUgccug 58 : +::U UUA: AU:A:::C: ::UAAA+C:: CU ::G+ :: :G:::U:UG :+CC G 51062 UAGAUUGUUACAAUAAUUACUUAUUAAAUCCAGCUcUAGUuAUCAGUAAUUUGAAACCAG 51121 >>>>> 59 gagac 63 ::+ : 51122 AUGAA 51126 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #449,emb|8254600| 816542 bp 6 contigs ----isReversed: 1 ----hitSequence: UUUAUUUUAUAUGACAUAUUUCAUUCAAAUAUUUUAUCUUAAUAAAAUUUAAUACAGAUUAUUUUAUAAA ----ssRNAplot: (((((......((((((((((((((.....(((.......)))..))))))))))))))......))))) ----hitGC: 0.1 ----pairStats: 22,0,0,7 hit 19 : 550397 550328 (rev) 14.85 bits <<<<<---.--<<<<<<<<<<<<<<-----<<<___....>>>-.>>>>>>>>>>>>>>. 1 gucucuuu.uAUGAuGaccucagccuAAAccccucu....gggc.ggcugagguCuGAU. 53 :U:::UUU UAUGA:::::U ::: AAA+:::U++ ::: ::: A:::::GAU 266146 UUUAUUUUaUAUGACAUAUUUCAUUCAAAUAUUUUAucuuAAUAaAAUUUAAUACAGAUu 266205 ----->>>>> 54 gccuggagac 63 + +U+:::A: 266206 AUUUUAUAAA 266215 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #449,emb|8254600| 816542 bp 6 contigs ----isReversed: 1 ----hitSequence: AUCAUUCAAUGAUAGCUUUAUAAUUAAAUCUUUAAUAGAAGUUAUAAGGUUUGAAGCUAAUGAG ----ssRNAplot: (((((....(((((((((((((.......(((......))).)))))))))))))....))))) ----hitGC: 0.234375 ----pairStats: 22,1,2,4 hit 20 : 244106 244043 (rev) 18.32 bits <<<<<-----<<<<<<<<<<<<<<.-----<<<___...>>>->>>>>>>>>>>>>>--- 1 gucucuuuuAUGAuGaccucagcc.uAAAccccucu...gggcggcugagguCuGAUgcc 56 UC::U A+GAU::C:U:A:: UAAA+C::U + ::G+ ::U:A:G::UGA+GC+ 572437 AUCAUUCA-AUGAUAGCUUUAUAAuUAAAUCUUUAAuagAAGU-UAUAAGGUUUGAAGCU 572494 -->>>>> 57 uggagac 63 ::GA 572495 A-AUGAG 572500 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #453,emb|8254602| 164297 bp 2 contigs ----isReversed: 0 ----hitSequence: AUUUUUUUCAUAAUCAAACUUACUUAAAGCAUUUAAAUUUGUAUUAAUUUCUGGUUAUUAAAAU ----ssRNAplot: (((((.....((((((((((((((.....(((....)))..))))))))))))))....))))) ----hitGC: 0.15625 ----pairStats: 22,0,0,10 hit 21 : 127034 127097 (fwd) 14.82 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___.>>>-.>>>>>>>>>>>>>>----- 1 gucucuuuuAUGAuGaccucagccuAAAccccucu.gggc.ggcugagguCuGAUgccug 58 :U:U:UUU+AU AU A:: :+:: UAAA+ ::U++ :: + ::+: ::U UG U U+ 127034 AUUUUUUUCAUAAUCAAACUUACUUAAAGCAUUUAaAUUUgUAUUAAUUUCUGGU-UAUU 127092 >>>>> 59 gagac 63 :A:A: 127093 AAAAU 127097 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #466,emb|8254460| 638469 bp 5 contigs ----isReversed: 0 ----hitSequence: UCUUUUAUAUGAAAAAAAAAGUUUAAAUAAUUCAUUUGUUCAUUUUUAUUUGUAACUUAAAUA ----ssRNAplot: (((((....((((((((((((((.....(((..)))....))))))))))))))....))))) ----hitGC: 0.126984 ----pairStats: 22,0,2,4 hit 22 : 264847 264909 (fwd) 14.87 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___>>>-...>>>>>>>>>>>>>>---- 1 gucucuuuuAUGAuGaccucagccuAAAccccucugggc...ggcugagguCuGAUgccu 57 :::U:U U A+ A::A :::A+: UAAA+:::UC :::+ :+U::: U::G + CU 264847 UCUUUUAU-AUGAAAAAAAAAGUUUAAAUAAUUC-AUUUguuCAUUUUUAUUUGUA-ACU 264903 ->>>>> 58 ggagac 63 +:A::: 264904 UAAAUA 264909 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #470,emb|8254607| 557789 bp 5 contigs ----isReversed: 0 ----hitSequence: CUUUUAUAAUAACAAGGAUUUUUCUAAACAAAACUUUUUAGAAAAAAUUUUGAUUCUAAAAG ----ssRNAplot: (((((....((((((((((((((......(((....))).))))))))))))))...))))) ----hitGC: 0.177419 ----pairStats: 22,0,2,6 hit 23 : 327541 327602 (fwd) 16.42 bits <<<<<-----<<<<<<<<<<<<<<.-----<<<___.>>>->>>>>>>>>>>>>>----- 1 gucucuuuuAUGAuGaccucagcc.uAAAccccucu.gggcggcugagguCuGAUgccug 58 :U:U:+U AU A::A: ::::: UAAAC::: CU ::: ::::: :U::G U CU 327541 CUUUUAUA-AUAACAAGGAUUUUUcUAAACAAAACUuUUUAGAAAAAAUUUUGAU-UCU- 327597 >>>>> 59 gagac 63 :A:A: 327598 AAAAG 327602 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #470,emb|8254607| 557789 bp 5 contigs ----isReversed: 0 ----hitSequence: UUUUCAGAUAUGCUUUUAUAAAAUGAAAUACUUUUAACACAAUUUUAUAAUUAAUUUUAGUGUAUA ----ssRNAplot: (((((.....((((((((((((((.....(((...)))...))))))))))))))......))))) ----hitGC: 0.151515 ----pairStats: 22,0,0,9 hit 24 : 481412 481477 (fwd) 14.01 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___>>>.-.>>>>>>>>>>>>>>----- 1 gucucuuuuAUGAuGaccucagccuAAAccccucuggg.c.ggcugagguCuGAUgccug 58 :+: C+ UAUG:U :::U:A:::+AAA+ ::U+U:: C :::U:A::: U:AU + G 481412 UUUUCAGAUAUGCUUUUAUAAAAUGAAAUACUUUUAACaCaAUUUUAUAAUUAAUUUUAG 481471 .>>>>> 59 .gagac 63 G :+: 481472 uGUAUA 481477 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #478,emb|8254609| 555380 bp 1 contigs ----isReversed: 1 ----hitSequence: UAUUUAUUACAUGAUAAAAUUAAUUUUAAAAUAGUAUUCAGAAUUGAUUUCUGAUUUAAAAGA ----ssRNAplot: (((((......((((((((((((((....(((...)))...))))))))))))))...))))) ----hitGC: 0.142857 ----pairStats: 22,0,1,6 hit 25 : 246480 246418 (rev) 14.96 bits <<<<<---.--<<<<<<<<<<<<<<-----<<<___>>>-..>>>>>>>>>>>>>>---- 1 gucucuuu.uAUGAuGaccucagccuAAAccccucugggc..ggcugagguCuGAUgccu 57 :::U:+UU +AUGAU:A::U A:::U AA ::: U:::C :::U A::U:UGAU + 308901 UAUUUAUUaCAUGAUAAAAUUAAUUUUAA-AAUAGUAUUCagAAUUGAUUUCUGAU-UUA 308958 ->>>>> 58 ggagac 63 :A::: 308959 -AAAGA 308963 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #479,emb|8254463| 30622 bp 1 contigs ----isReversed: 0 ----hitSequence: UUAAUUUUAUGAUAUAUAAUAUAAAAUACUUUAAUUACUUAUUUUAUAUGAUGCUUUACAUCAA ----ssRNAplot: (((((....(((((((((((((.....(((...)))..))))))))).)))).......))))) ----hitGC: 0.125 ----pairStats: 22,1,0,8 hit 26 : 19969 20032 (fwd) 16.31 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___>>>.->>>>>>>>>>>>>>-----. 1 gucucuuuuAUGAuGaccucagccuAAAccccucuggg.cggcugagguCuGAUgccug. 58 :U ::UUU AUGAU A:: :A:: AAA+:::U++::: C ::U: ::U UGAUGC+U+ 19969 UUAAUUUU-AUGAU-AUAUAAUAUAAAAUACUUUAAUUaCUUAUUUUAUAUGAUGCUUUa 20026 .>>>>> 59 .gagac 63 :: A: 20027 cAUCAA 20032 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #482,emb|8254464| 405752 bp 2 contigs ----isReversed: 1 ----hitSequence: CUUGGAGUUGUAUUAAAUUUUAAUUAAAGAUUUAAAAAUUAUUAAAAUUUUUGAUUCUCUUAG ----ssRNAplot: (((((.....((((((((((((((.....(((....))).))))))))))))))....))))) ----hitGC: 0.15873 ----pairStats: 22,0,1,4 hit 27 : 167351 167289 (rev) 15.76 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___.>>>->>>>>>>>>>>>>>-----> 1 gucucuuuuAUGAuGaccucagccuAAAccccucu.gggcggcugagguCuGAUgccugg 59 :U:::+ UU + :U:A::U:::::UAAA+:::U + :::+:::::A::U:U: + +++: 238402 CUUGGAGUUGUAUUAAAUUUUAAUUAAAGAUUUAAaAAUUAUUAAAAUUUUUGA-UUCUC 238460 >>>> 60 agac 63 ::A: 238461 UUAG 238464 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #520,emb|8254617| 935000 bp 2 contigs ----isReversed: 0 ----hitSequence: CAUUUUUAAUAAAAAUUAGAAUUUAAAAUUUUCGAAAAAAUUUUAAUUAAUUGUUGAAAAAG ----ssRNAplot: (((((....((((((((((((((.....(((...))).)))))))))))))).....))))) ----hitGC: 0.112903 ----pairStats: 22,0,1,4 hit 28 : 342077 342138 (fwd) 14.62 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___.>>>->>>>>>>>>>>>>>-----. 1 gucucuuuuAUGAuGaccucagccuAAAccccucu.gggcggcugagguCuGAUgccug. 58 : :U:UU AU ::A::: A:::UAAA :::UC ::: :::U :::U:: U ++UG 342077 CAUUUUUA-AUAAAAAUUAGAAUUUAAAAUUUUC-gAAAAAAUUUUAAUUAAUU-GUUGa 342133 >>>>> 59 gagac 63 :A: : 342134 AAAAG 342138 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #520,emb|8254617| 935000 bp 2 contigs ----isReversed: 1 ----hitSequence: UUUUGUUGAUGUAGGUGUUUUUUAAAUUAUUCUUAUAAUUAAAGAGGUUUUUAUUCUUUUCAAAA ----ssRNAplot: (((((....(((((((((((((.....(((....)))...))))))))))).))......))))) ----hitGC: 0.184615 ----pairStats: 22,1,4,4 hit 29 : 900357 900293 (rev) 16.18 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___.>>>.-.>>>>>>>>>>>>>>---- 1 gucucuuuuAUGAuGaccucagccuAAAccccucu.ggg.c.ggcugagguCuGAUgccu 57 :U:U:UU AUG U::::::+:::UAAA+:::UCU ::: + :::+::::::U AU C+U 34644 UUUUGUUG-AUG-UAGGUGUUUUUUAAAUUAUUCUuAUAaUuAAAGAGGUUUUUAUUCUU 34701 -.>>>>> 58 g.gagac 63 + :A:A: 34702 UuCAAAA 34708 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #520,emb|8254617| 935000 bp 2 contigs ----isReversed: 1 ----hitSequence: CAUUUUUAUUUGAAAAUAAAUUAUUAAAACUUGAAUCUUAAGAUUUUAUUAGAUCCUUAAAAGC ----ssRNAplot: (((((.....((((((((((((((....(((.....))).)))))))))))))).....))))) ----hitGC: 0.171875 ----pairStats: 22,0,0,10 hit 30 : 330007 329944 (rev) 16.00 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___..>>>-.>>>>>>>>>>>>>>---- 1 gucucuuuuAUGAuGaccucagccuAAAccccucu..gggc.ggcugagguCuGAUgccu 57 ::U:UU U UGA::A::::+:::UAAA :::U + ::: :::+::::U::GAU CCU 604994 CAUUUUUAUUUGAAAAUAAAUUAUUAAA-ACUUGAauCUU-aAGAUUUUAUUAGAU-CCU 605050 -.>>>>> 58 g.gagac 63 + :A:: 605051 UaAAAGC 605057 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #522,emb|8253815| 514547 bp 2 contigs ----isReversed: 1 ----hitSequence: UUCAUUUUUAUCAAAAUAUAUUAUAAAAUCGCUUAGAAAUGUCUUAUUUUUGCUUUACCUUAUUAA ----ssRNAplot: (((((.....((((((((((((((.....(((...)))..)))))))))))))).......))))) ----hitGC: 0.181818 ----pairStats: 22,0,1,9 hit 31 : 495315 495250 (rev) 13.98 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___>>>.->>>>>>>>>>>>>>..---- 1 gucucuuuuAUGAuGaccucagccuAAAccccucuggg.cggcugagguCuGAU..gccu 57 :U ::UUUUAU:A::A :U:+ :: AAA+ CU++G +:: +:A: U::G:U +CCU 19233 UUCAUUUUUAUCAAAAUAUAUUAUAAAAUCGCUUAGAAaUGUCUUAUUUUUGCUuuACCU 19292 ->>>>> 58 ggagac 63 +:: A: 19293 UAUUAA 19298 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #530,emb|8253817| 192876 bp 4 contigs ----isReversed: 0 ----hitSequence: UUUUUACUAUGAAGCACUAAGAUGGAAAUCCUUUGGAUCAUCUCGUGCUGAAAAUUAAAAA ----ssRNAplot: (((((....((((((((.((((((....(((...))).))))))))))))))....))))) ----hitGC: 0.311475 ----pairStats: 22,0,0,3 hit 32 : 183330 183390 (fwd) 17.17 bits <<<<<-----<<<<<<<<.<<<<<<-----<<<___>>>-.>>>>>>>>>>>>>>----- 1 gucucuuuuAUGAuGacc.ucagccuAAAccccucugggc.ggcugagguCuGAUgccug 58 :U:U:+ U A+GA:G::C :::: +AAA :CCU+UGG: :::: G::C:GA++ +U 183330 UUUUUACU-AUGAAGCACuAAGAUGGAAA-UCCUUUGGA-uCAUCUCGUGCUGAAAAUU- 183385 >>>>> 59 gagac 63 :A:A: 183386 AAAAA 183390 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #535,emb|8254475| 588109 bp 1 contigs ----isReversed: 0 ----hitSequence: UUUUUAUAAUUAUUAAAAAUUAUAAAAAUAUUCAUCCAGCUCUUUUUUGAUUUUUAAAAA ----ssRNAplot: (((((....((((((((((((((.....(((..))).))))))))))))))....))))) ----hitGC: 0.116667 ----pairStats: 22,0,0,9 hit 33 : 69081 69140 (fwd) 15.90 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___>>>->>>>>>>>>>>>>>----->> 1 gucucuuuuAUGAuGaccucagccuAAAccccucugggcggcugagguCuGAUgccugga 60 :U:U:+U AU:AU A::::+ :: AAA ::UC :: C:: +::::U UG:U +U+:A 69081 UUUUUAUA-AUUAUUAAAAAUUAUAAAAAUAUUC-AUCCAGCUCUUUUUUGAU-UUUUAA 69137 >>> 61 gac 63 :A: 69138 AAA 69140 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #535,emb|8254475| 588109 bp 1 contigs ----isReversed: 1 ----hitSequence: UUUUUUUCCAUGAUAAAUUUACCCUCUAAAUCUUGCUACGAUAAACUCUGAUUUUUGGCAAAAA ----ssRNAplot: (((((.....((((((((((((((.....(((..))).)))))))))))))).......))))) ----hitGC: 0.28125 ----pairStats: 22,0,0,9 hit 34 : 110239 110176 (rev) 16.39 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___>>>->>>>>>>>>>>>>>-----.. 1 gucucuuuuAUGAuGaccucagccuAAAccccucugggcggcugagguCuGAUgccug.. 58 :U:U:UU++AUGAU:A::U:A C U A : CU+ G : G U:A::U:UGAU +UG 477871 UUUUUUUCCAUGAUAAAUUUACCCUCUAAAUCUU-GCUACGAUAAACUCUGAUUUUUGgc 477929 >>>>> 59 gagac 63 :A:A: 477930 AAAAA 477934 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #562,emb|8253823| 331797 bp 2 contigs ----isReversed: 0 ----hitSequence: UAUUAAGUUAUGAAAAUAAUAUAAUAAACAGAUUUGAAUUAUUAUUAGUUACCUUAAAUA ----ssRNAplot: (((((.....((((((((((((((....(((..))))))))))))))))).....))))) ----hitGC: 0.133333 ----pairStats: 22,0,2,7 hit 35 : 201632 201691 (fwd) 14.93 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___>>>->>>>>>>>>>>>>>----->> 1 gucucuuuuAUGAuGaccucagccuAAAccccucugggcggcugagguCuGAUgccugga 60 :::U + UUAU A::A::::A UAAA C: + :G U::::U::G U+CCU+ A 201632 UAUUAAGUUAUGAAAAUAAUAUAAUAAA-CAGAU-UUG-AAUUAUUAUUAGUUACCUUAA 201688 >>> 61 gac 63 ::: 201689 AUA 201691 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #562,emb|8253823| 331797 bp 2 contigs ----isReversed: 1 ----hitSequence: AAAUCUGAAUGAUAAUAUAUUUUGCAAAUUAAAAUAAUAAGUUAUAUUUGAAUAAUUUAAAAUU ----ssRNAplot: (((((....((((((((((((((....(((.....))))))))))))))))).......))))) ----hitGC: 0.109375 ----pairStats: 22,0,1,6 hit 36 : 127996 127933 (rev) 14.87 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___..>>>->>>>>>>>>>>>>>.---- 1 gucucuuuuAUGAuGaccucagccuAAAccccucu..gggcggcugagguCuGAU.gccu 57 :::U U A+GAU:A::U:+:::+ AA ::: + ::: :::+:A::U:UGA+ + +U 203802 AAAUCUGA-AUGAUAAUAUAUUUUGCAA-AUUAAAauAAU-AAGUUAUAUUUGAAuAAUU 203858 -.>>>>> 58 g.gagac 63 + A::: 203859 UaAAAUU 203865 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #588,emb|8254486| 430721 bp 2 contigs ----isReversed: 1 ----hitSequence: GUUUGAUGAUGCAGGUAUUUAAAUAAAAAUAUAUUAUAUACUAAAUAUUUAAUAUCUAUCAAUC ----ssRNAplot: (((((....((((((((((((((.....(((...)))..))))))))))))))......))))) ----hitGC: 0.171875 ----pairStats: 22,0,2,6 hit 37 : 403250 403187 (rev) 16.85 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___>>>.->>>>>>>>>>>>>>.----- 1 gucucuuuuAUGAuGaccucagccuAAAccccucuggg.cggcugagguCuGAU.gccug 58 G+:U:+U AUG::::::U::: UAAA :::U U::: + :::A::::::AU C+ + 27472 GUUUGAUG-AUGCAGGUAUUUAAAUAAAAAUAUAUUAUaUACUAAAUAUUUAAUaUCUAU 27530 >>>>> 59 gagac 63 :A:+C 27531 CAAUC 27535 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #588,emb|8254486| 430721 bp 2 contigs ----isReversed: 1 ----hitSequence: UAUUAAUUAGGCUAUGGUAAAUUGAAAUUUUAAAAAGCAGAUUUAUUAUAUAAAUUUUAAGA ----ssRNAplot: (((((....((((((((((((((.....(((...)))..))))))))))))))....))))) ----hitGC: 0.16129 ----pairStats: 22,0,4,4 hit 38 : 122137 122076 (rev) 14.53 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___>>>-.>>>>>>>>>>>>>>-----> 1 gucucuuuuAUGAuGaccucagccuAAAccccucugggc.ggcugagguCuGAUgccugg 59 :::U:+UU A:G: ::: U:A:::+AAA+::: +:::C :::U:A ::: :A: +U+: 308585 UAUUAAUU-AGGCUAUGGUAAAUUGAAAUUUUAAAAAGCaGAUUUAUUAUAUAA-AUUUU 308642 >>>> 60 agac 63 A::: 308643 AAGA 308646 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #590,emb|8254487| 513792 bp 3 contigs ----isReversed: 0 ----hitSequence: GUUAUUUAUAUGGUAUGAAGAUUCUAAAUUUAUUAAGGGAUCUUGUUUCAGCUUUUUUAGC ----ssRNAplot: (((((.....((((((((((((((....(((...))))))))))))))))).....))))) ----hitGC: 0.262295 ----pairStats: 22,0,4,5 hit 39 : 479388 479448 (fwd) 14.90 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___>>>->>>>>>>>>>>>>>-----.> 1 gucucuuuuAUGAuGaccucagccuAAAccccucugggcggcugagguCuGAUgccug.g 59 G+:: UU UA+G U: :::A::CUAAA ::: +U::: G::U::: :U A+ C+U+ 479388 GUUAUUUAUAUGGUAUGAAGAUUCUAAA-UUUAUUAAG-GGAUCUUGUUUCAG-CUUUuU 479444 >>>> 60 agac 63 ::+C 479445 UAGC 479448 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #624,emb|8254638| 979488 bp 2 contigs ----isReversed: 0 ----hitSequence: GUUAAAUCAUGUUAAAAUUAUUUUGUAAAGCUUUUCAAGUCAUCAUUUUUAAUUUUUUAAC ----ssRNAplot: (((((....(((((((((((((........(((...))).)))))))))))))...))))) ----hitGC: 0.180328 ----pairStats: 22,1,0,5 hit 40 : 969875 969935 (fwd) 14.16 bits <<<<<-----<<<<<<<<<<<<<.<.-----<<<___>>>->>>>>>>>>>>>>>----- 1 gucucuuuuAUGAuGaccucagc.c.uAAAccccucugggcggcugagguCuGAUgccug 58 GU:::+U+ AUG:U:A::U A: UAAA+C::U++::G+ :U A::U:U:AU +U 969875 GUUAAAUC-AUGUUAAAAUUAUUuUgUAAAGCUUUUCAAGU-CAUCAUUUUUAAU-UUU- 969930 >>>>> 59 gagac 63 :::AC 969931 UUAAC 969935 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #624,emb|8254638| 979488 bp 2 contigs ----isReversed: 1 ----hitSequence: UUCUGAUUUUGAUGAUUAUAUAUUAAAGUUUUCUAAAGAUAUAUAAUCAUAUCCUUAGAA ----ssRNAplot: (((((....((((((((((((((.....(((...))).))))))))))))))...))))) ----hitGC: 0.183333 ----pairStats: 22,0,1,2 hit 41 : 71466 71407 (rev) 18.10 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___>>>->>>>>>>>>>>>>>----->> 1 gucucuuuuAUGAuGaccucagccuAAAccccucugggcggcugagguCuGAUgccugga 60 :UCU +UU UG GA::::A:::UAAA+:::UCU::: :::U::::UC AU CCU A 908023 UUCUGAUU-UUGAUGAUUAUAUAUUAAAGUUUUCUAAAGAUAUAUAAUCAUAU-CCU-UA 908079 >>> 61 gac 63 GA: 908080 GAA 908082 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #659,emb|8254645| 1076301 bp 3 contigs ----isReversed: 0 ----hitSequence: UUUAUGUUGAUGUCAAGAUUUAAUUUAAAUUCAAAUAUUUCAUUUUCUAUAUUUUAUAAA ----ssRNAplot: (((((.....((((((((((((((....(((..))))))))))))))))).....))))) ----hitGC: 0.133333 ----pairStats: 22,0,1,6 hit 42 : 197059 197118 (fwd) 16.77 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___>>>->>>>>>>>>>>>>>----->> 1 gucucuuuuAUGAuGaccucagccuAAAccccucugggcggcugagguCuGAUgccugga 60 :U::: UU AUG:::A::U +:::U AA :::+ ::: :::+ A::U:::AU+ +U+:: 197059 UUUAUGUUGAUGUCAAGAUUUAAUUUAA-AUUCA-AAU-AUUUCAUUUUCUAUAUUUUAU 197115 >>> 61 gac 63 :A: 197116 AAA 197118 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #659,emb|8254645| 1076301 bp 3 contigs ----isReversed: 0 ----hitSequence: UAUUUUUUCUAUGAAAAUAAAUACUUGAAACAAUAAAAUUAAAAUUCAUAUAUGAUAAAUUAAGUA ----ssRNAplot: (((((......((((((((((((((......(((...)))..)))))))))))))).....))))) ----hitGC: 0.121212 ----pairStats: 22,0,1,8 hit 43 : 983860 983925 (fwd) 15.98 bits <<<<<---.--<<<<<<<<<<<<<<.-----<<<___>>>.->>>>>>>>>>>>>>---- 1 gucucuuu.uAUGAuGaccucagcc.uAAAccccucuggg.cggcugagguCuGAUgccu 57 :::U:UUU UAUGA::A:: :+::: +AAAC::: +::: :::+: ::U::GAU+ U 983860 UAUUUUUUcUAUGAAAAUAAAUACUuGAAACAAUAAAAUUaAAAUUCAUAUAUGAUAAAU 983919 ->>>>> 58 ggagac 63 +:A::: 983920 UAAGUA 983925 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #659,emb|8254645| 1076301 bp 3 contigs ----isReversed: 1 ----hitSequence: UUCUUUUUUAUGACUUAAAAUUACAAAUUUGAUUAGUUAUUUUUAAUGAUUUUCUAAAGUA ----ssRNAplot: (((((.....(((((((((((((.....(((..))).)))))))))))))......))))) ----hitGC: 0.147541 ----pairStats: 22,1,2,6 hit 44 : 39127 39067 (rev) 14.31 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___>>>->>>>>>>>>>>>>>-----.> 1 gucucuuuuAUGAuGaccucagccuAAAccccucugggcggcugagguCuGAUgccug.g 59 :+CU:UUUUAUGA: :::::+::C AAA+:: + ::+ ::+::::: :GAU +++ : 1037175 UUCUUUUUUAUGACUUAAAAUUAC-AAAUUUGAU-UAGU-UAUUUUUAAUGAUUUUCUaA 1037231 >>>> 60 agac 63 AG+: 1037232 AGUA 1037235 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #660,emb|8253843| 128647 bp 2 contigs ----isReversed: 0 ----hitSequence: UUUAUUUUAUGCUAAUAUUUUUGUAAAUAUUCUAUAUAAAUAAAUUGUUUUAUACUUUAAUUUAUAAA ----ssRNAplot: (((((....((((((((((((((.....(((...)))..))))))))))))))..........))))) ----hitGC: 0.0882353 ----pairStats: 22,0,1,8 hit 45 : 82521 82588 (fwd) 16.32 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___>>>-.>>>>>>>>>>>>>>-----. 1 gucucuuuuAUGAuGaccucagccuAAAccccucugggc.ggcugagguCuGAUgccug. 58 :U:::UUU AUG:U:A:: ::: UAAA+:: +++ :: ::: ::U:U:AU+C+U+ 82521 UUUAUUUU-AUGCUAAUAUUUUUGUAAAUAUUCUAUAUAaAUAAAUUGUUUUAUACUUUa 82579 ....>>>>> 59 ....gagac 63 :::A: 82580 auuuAUAAA 82588 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #667,emb|8254648| 202485 bp 5 contigs ----isReversed: 0 ----hitSequence: UAUUUAAAAUUAUGUUUUUUACUAAAAAAUUUUUGAAUUUAGUUAGAAACUCAUGGGUUUUAAAAGA ----ssRNAplot: (((((....((((((((((((((.....(((....)))..))))))))))))))........))))) ----hitGC: 0.164179 ----pairStats: 22,0,1,5 hit 46 : 197696 197762 (fwd) 14.79 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___.>>>-.>>>>>>>>>>>>>>.---- 1 gucucuuuuAUGAuGaccucagccuAAAccccucu.gggc.ggcugagguCuGAU.gccu 57 :::U:+ AU: UG::: :+:C: AAA :::U+U :::+ :G:+: :::CU :U G++U 197696 UAUUUAAA-AUUAUGUUUUUUACUAAAAAAUUUUUgAAUUuAGUUAGAAACUCAUgGGUU 197754 -..>>>>> 58 g..gagac 63 + :A::: 197755 UuaAAAGA 197762 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #669,emb|8254649| 819627 bp 9 contigs ----isReversed: 0 ----hitSequence: AUUUUUUCAUGAAAUUCAUUUUUUAAAAAUUGUUUUUUACAUUUAAUUGAAAACGAAAAU ----ssRNAplot: (((((....((((((((((((((....(((....)))))))))))))))))....))))) ----hitGC: 0.133333 ----pairStats: 22,0,0,7 hit 47 : 9890 9949 (fwd) 14.96 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___.>>>->>>>>>>>>>>>>>-----> 1 gucucuuuuAUGAuGaccucagccuAAAccccucu.gggcggcugagguCuGAUgccugg 59 :U:U:UU+ A+GA:::::: : : UAAA :: U U :: : : ::::::GA+ +G: 9890 AUUUUUUC-AUGAAAUUCAUUUUUUAAA-AAUUGUuUUU-UACAUUUAAUUGAA-AACGA 9945 >>>> 60 agac 63 A:A: 9946 AAAU 9949 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #669,emb|8254649| 819627 bp 9 contigs ----isReversed: 0 ----hitSequence: AUUGCUUUUAUGAUAAUCAAUCCUUCAAAUAUUUUAUUUGAUAUUAUUAGAAGCAAAGCAAA ----ssRNAplot: (((((.....((((((((((((((....(((...))).)))))))))))))).....))))) ----hitGC: 0.209677 ----pairStats: 22,0,0,8 hit 48 : 401290 401351 (fwd) 15.03 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___>>>-.>>>>>>>>>>>>>>-----> 1 gucucuuuuAUGAuGaccucagccuAAAccccucugggc.ggcugagguCuGAUgccugg 59 U::CUUUUA+GA :A::: + C U AA :::U+U::: G + :::U: GA+GC G 401290 AUUGCUUUUAUGAUAAUCAAUCCUUCAA-AUAUUUUAU-uUGAUAUUAUUAGAAGCAAAG 401347 >>>> 60 agac 63 ::A 401348 CAAA 401351 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #669,emb|8254649| 819627 bp 9 contigs ----isReversed: 0 ----hitSequence: GUUAUCUUAUGCUAAAAUUUAUUUAAAGCAUCCUUAAUAUGGUGAUAAUUUCAAGAUUGAAUUAU ----ssRNAplot: (((((....((((((((((((((.....(((.....))).))))))))))))))......))))) ----hitGC: 0.215385 ----pairStats: 22,0,4,8 hit 49 : 679052 679116 (fwd) 14.47 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___..>>>->>>>>>>>>>>>>>----- 1 gucucuuuuAUGAuGaccucagccuAAAccccucu..gggcggcugagguCuGAUgccug 58 :U::: UU A+G:U:A :+:::UAAA+ ::+CU :: +:::+: U:U:A+G +UG 679052 GUUAUCUU-AUGCUAAAAUUUAUUUAAAGCAUCCUuaAUAUGGUGAUAAUUUCAAGAUUG 679110 .>>>>> 59 .gagac 63 :::A: 679111 aAUUAU 679116 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #669,emb|8254649| 819627 bp 9 contigs ----isReversed: 1 ----hitSequence: AAUUUUAUAUCAAAAUAAAAAGUUAAAAAAUAUUUAUUUAAUUCUUAUUUUAUUGUUUAAAUU ----ssRNAplot: (((((....((((((((((((((.....(((....))).)))))))))))))).....))))) ----hitGC: 0.0634921 ----pairStats: 22,0,0,4 hit 50 : 335159 335097 (rev) 14.39 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___.>>>->>>>>>>>>>>>>>-----> 1 gucucuuuuAUGAuGaccucagccuAAAccccucu.gggcggcugagguCuGAUgccugg 59 :::U:U U AU: ::A::::A: :UAAA ::: +U :::+: :U::::U:: :U ++U+: 484469 AAUUUUAU-AUCAAAAUAAAAAGUUAAAAAAUAUUuAUUUAAUUCUUAUUUUAUUGUUUA 484527 >>>> 60 agac 63 A::: 484528 AAUU 484531 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #669,emb|8254649| 819627 bp 9 contigs ----isReversed: 1 ----hitSequence: UUCUUUGUUAAGCUAUUCUAUUAUUAAAAUUUUUAAAAAUGUAGACUAGAACUUACACUAAGAA ----ssRNAplot: (((((.....((((((((((((((.....(((....)))...))))))))))))))...))))) ----hitGC: 0.203125 ----pairStats: 22,0,0,7 hit 51 : 157043 156980 (rev) 14.39 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___.>>>-..>>>>>>>>>>>>>>---- 1 gucucuuuuAUGAuGaccucagccuAAAccccucu.gggc..ggcugagguCuGAUgccu 57 :UCU:U UUA:G:U:::CU:+:::UAAA :::U++ :::+ :::+:AG:::U:A: CU 662585 UUCUUUGUUAAGCUAUUCUAUUAUUAAAAUUUUUAaAAAUguAGACUAGAACUUAC-ACU 662643 ->>>>> 58 ggagac 63 :AGA: 662644 -AAGAA 662648 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #676,emb|8254650| 1231906 bp 7 contigs ----isReversed: 0 ----hitSequence: UUCUUUUUUAUUAAGAUAAAUUUAUUGAAAUAAUUUUGAUAAAAUAAAUUUUAGUUAUUUUAAGAG ----ssRNAplot: (((((.....(((((..(((((((((.....(((....))).)))))))))))))).....))))) ----hitGC: 0.106061 ----pairStats: 22,0,2,5 hit 52 : 757522 757587 (fwd) 14.01 bits <<<<<-----<<<<<..<<<<<<<<<-----<<<___.>>>->>>>>>>>>>>>>>---- 1 gucucuuuuAUGAuG..accucagccuAAAccccucu.gggcggcugagguCuGAUgccu 57 UCU:UUUUAU:A:: A::U:::::+AAA+ ::U+U :: :::::A::U::G:U+ +U 757522 UUCUUUUUUAUUAAGauAAAUUUAUUGAAAUAAUUUUgAUAAAAUAAAUUUUAGUUAUUU 757581 ->>>>> 58 ggagac 63 +:AGA 757582 UAAGAG 757587 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #676,emb|8254650| 1231906 bp 7 contigs ----isReversed: 1 ----hitSequence: UUAUUUUUAAUGAACAAUUUUAAAUAAAAGUUAAUUUUUAAAGUUGAAAUCUAAAAAA ----ssRNAplot: (((((.....((((((((((((((....(((..)))))))))))))))))...))))) ----hitGC: 0.103448 ----pairStats: 22,0,2,5 hit 53 : 915915 915858 (rev) 15.46 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___>>>->>>>>>>>>>>>>>----->> 1 gucucuuuuAUGAuGaccucagccuAAAccccucugggcggcugagguCuGAUgccugga 60 :U:U:UUU AUG ::A::U:::::UAAA : :U : : :::::A::U:: AU C+ :A 315992 UUAUUUUUAAUGAACAAUUUUAAAUAAA-AGUUA-AUU-UUUAAAGUUGAAAU-CUA-AA 316046 >>> 61 gac 63 :A: 316047 AAA 316049 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #676,emb|8254650| 1231906 bp 7 contigs ----isReversed: 1 ----hitSequence: AUCAUUUUAUGAUAAGAUAUUUAUUAAGAUUUAUAAUUUUAAGAAUUUUUGAAAUUUGAUUAU ----ssRNAplot: (((((....((((((((((((((.....(((...)))..)))))))))))))).....))))) ----hitGC: 0.111111 ----pairStats: 22,0,2,5 hit 54 : 600691 600629 (rev) 17.81 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___>>>-.>>>>>>>>>>>>>>-----> 1 gucucuuuuAUGAuGaccucagccuAAAccccucugggc.ggcugagguCuGAUgccugg 59 :U ::UUU A+GAU:A::U +:::U AA+:::U U:::+ :::+ A::U:UGA++ +UG: 631216 AUCAUUUU-AUGAUAAGAUAUUUAUUAAGAUUUAUAAUUuUAAGAAUUUUUGAAAUUUGA 631274 >>>> 60 agac 63 : A: 631275 UUAU 631278 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #676,emb|8254650| 1231906 bp 7 contigs ----isReversed: 1 ----hitSequence: UCUUCCAGAAUGAACAUAAAAACUGAAAAAAUGAUUUCAAGAGUUUUUUUCUGAAGCUUGAAUUA ----ssRNAplot: (((((.....((((((((((((((....(((...)))....)))))))))))))).....))))) ----hitGC: 0.261538 ----pairStats: 22,0,0,7 hit 55 : 531534 531470 (rev) 13.92 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___>>>-...>>>>>>>>>>>>>>---- 1 gucucuuuuAUGAuGaccucagccuAAAccccucugggc...ggcugagguCuGAUgccu 57 :::U A+GA: A :::A:C:+AAA :::U +:::C :G:U::: U :GA+GC+U 700373 UCUUCCAGAAUGAACAUAAAAACUGAAA-AAAUGAUUUCaagAGUUUUUUUCUGAAGCUU 700431 ->>>>> 58 ggagac 63 G A::: 700432 GAAUUA 700437 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #680,emb|8254652| 611172 bp 7 contigs ----isReversed: 1 ----hitSequence: GAUUCUUUUGUAUGAAAGUAAUUAAUUGAAAAGUCAAAAUCUUAAAAUCUUGAUUUUUUGAAUC ----ssRNAplot: (((((.......((((((((((((((.....(((...))))))))))))))))).....))))) ----hitGC: 0.203125 ----pairStats: 22,0,0,8 hit 56 : 346271 346208 (rev) 15.39 bits <<<<<---..--<<<<<<<<<<<<<<.-----<<<___>>>->>>>>>>>>>>>>>---- 1 gucucuuu..uAUGAuGaccucagcc.uAAAccccucugggcggcugagguCuGAUgccu 57 G::UCUUU UAUGA::: :::: +AAA : :+ +: : :::: :::GAU +U 264902 GAUUCUUUugUAUGAAAGUAAUUAAUuGAAA-AGUCAAAAU-CUUAAAAUCUUGAUUUUU 264959 ->>>>> 58 ggagac 63 +GA::C 264960 UGAAUC 264965 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #681,emb|8253850| 425044 bp 4 contigs ----isReversed: 0 ----hitSequence: UAUGCAUUUAUGAAAAUCUUUUAUUAAACAUAUUCAUAUUGUAUGAUAUUUUAAUUGCAUU ----ssRNAplot: (((((.....((((((((((((((.....(((....))).))))))))))))))..))))) ----hitGC: 0.163934 ----pairStats: 22,0,2,4 hit 57 : 355228 355288 (fwd) 15.93 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___.>>>->>>>>>>>>>>>>>-----> 1 gucucuuuuAUGAuGaccucagccuAAAccccucu.gggcggcugagguCuGAUgccugg 59 :::C+UUUA+G ::A::U +:::UAAAC:::U++ :::+:::+ A::U:: A+ + G 355228 UAUGCAUUUAUGAAAAUCUUUUAUUAAACAUAUUCaUAUUGUAUGAUAUUUUAA-UU--G 355284 >>>> 60 agac 63 ::: 355285 CAUU 355288 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #686,emb|8254654| 510086 bp 17 contigs ----isReversed: 0 ----hitSequence: UUUUUAUUAUGUAAAUAAAAUAUUAAAUAAAUUACCUUAUAAUUUAUUAAAAAAAUUAAAAA ----ssRNAplot: (((((....((((((((((((((.....(((...))).)))))))))))))).....))))) ----hitGC: 0.0483871 ----pairStats: 22,0,0,5 hit 58 : 138166 138227 (fwd) 17.62 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___>>>->>>>>>>>>>>>>>----->> 1 gucucuuuuAUGAuGaccucagccuAAAccccucugggcggcugagguCuGAUgccugga 60 :U:U:+UU A+G:::A:::: :::UAAA+: U++ :+::: ::::U:::A++ U+:A 138166 UUUUUAUU-AUGUAAAUAAAAUAUUAAAUAAAUUACCUUAUAAUUUAUUAAAAAAAUUAA 138224 >>> 61 gac 63 :A: 138225 AAA 138227 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #695,emb|8254657| 295151 bp 4 contigs ----isReversed: 1 ----hitSequence: AAUUUUUUAAGAUGAAAAUAAUUUUUUAAAUUUUAUCAACAAAAGAUAUAUUUGAUACUUCAUAGU ----ssRNAplot: (((((.......((((((((((((((.....(((....))).)))))))))))))).....))))) ----hitGC: 0.136364 ----pairStats: 22,0,1,8 hit 59 : 260841 260776 (rev) 14.36 bits <<<<<---..--<<<<<<<<<<<<<<-----<<<___.>>>->>>>>>>>>>>>>>---- 1 gucucuuu..uAUGAuGaccucagccuAAAccccucu.gggcggcugagguCuGAUgccu 57 ::: :UUU AUGA::A:: ::::UAAA+: : ++ : : :::: ::U::GAU CU 34311 AAUUUUUUaaGAUGAAAAUAAUUUUUUAAAUUUUAUCaACAAAAGAUAUAUUUGAU-ACU 34369 -.>>>>> 58 g.gagac 63 + : ::: 34370 UcAUAGU 34376 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #695,emb|8254657| 295151 bp 4 contigs ----isReversed: 1 ----hitSequence: AAAACUGCAAUGAUAAAUUUAAUCUAAAUCUAUAAAGAAGGUUAUAUUUUGAACAAAAUAGUUUU ----ssRNAplot: (((((.....((((((((((((((....(((....))).)))))))))))))).......))))) ----hitGC: 0.184615 ----pairStats: 22,0,1,4 hit 60 : 242919 242855 (rev) 16.97 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___.>>>-.>>>>>>>>>>>>>>.---- 1 gucucuuuuAUGAuGaccucagccuAAAccccucu.gggc.ggcugagguCuGAU.gccu 57 :: :CU + A+GAU:A:: :A::CUAAA :C: ++ :G: G::U: ::U:UGA+ + 52233 AAAACUGCAAUGAUAAAUUUAAUCUAAA-UCUAUAaAGA-aGGUUAUAUUUUGAAcAAAA 52290 -.>>>>> 58 g.gagac 63 + G: :: 52291 UaGUUUU 52297 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #695,emb|8254657| 295151 bp 4 contigs ----isReversed: 1 ----hitSequence: UUUAUAAAAUGCAUAGAUCAAUAGAAAGUUUAAUAAAUUGGUUUAUUUUUUAUUUAUUAAUUAA ----ssRNAplot: (((((....((((((((((((((.....(((...)))..))))))))))))))......))))) ----hitGC: 0.125 ----pairStats: 22,0,2,7 hit 61 : 196439 196376 (rev) 14.39 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___>>>-.>>>>>>>>>>>>>>-----. 1 gucucuuuuAUGAuGaccucagccuAAAccccucugggc.ggcugagguCuGAUgccug. 58 :U:::+ AUG:: A::U A:::+AAA+::: U:::+ :::U A::U ::AU + + 98713 UUUAUAAA-AUGCAUAGAUCAAUAGAAAGUUUAAUAAAUuGGUUUAUUUUUUAU-UUAUu 98770 .>>>>> 59 .gagac 63 :::A: 98771 aAUUAA 98776 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #695,emb|8254657| 295151 bp 4 contigs ----isReversed: 1 ----hitSequence: UAUUUGCUAUGAACAAAUUUCAUAAAAGAUUUUAUUUUUUAAAUUUUAGAGUGUUAUCAUUUA ----ssRNAplot: (((((....((((((((((((((.....(((..))).)))))))))))))).......))))) ----hitGC: 0.15873 ----pairStats: 22,0,1,9 hit 62 : 187030 186968 (rev) 14.89 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___>>>->>>>>>>>>>>>>>.-----. 1 gucucuuuuAUGAuGaccucagccuAAAccccucugggcggcugagguCuGAU.gccug. 58 ::: : U A+GA: A::U:: : AAA+: :U+ : :+ : ::A::U :GA+ G + + 108122 UAUUUGCU-AUGAACAAAUUUCAUAAAAGAUUUU-AUUUUUUAAAUUUUAGAGuGUUAUc 108179 >>>>> 59 gagac 63 : ::: 108180 AUUUA 108184 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #697,emb|8254658| 337613 bp 4 contigs ----isReversed: 1 ----hitSequence: UUUUUAUUUAUAUUGAAAAUUUUACAAAUAUUUAAAAUAAAAUAUUUUCUUCAUUUAAAAA ----ssRNAplot: (((((.....((((((((((((((.....(((...))).))))))))))))))...))))) ----hitGC: 0.0655738 ----pairStats: 22,0,0,5 hit 63 : 137991 137931 (rev) 18.46 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___>>>->>>>>>>>>>>>>>----->> 1 gucucuuuuAUGAuGaccucagccuAAAccccucugggcggcugagguCuGAUgccugga 60 :U:U:+UUUA+ :UGA::::+:: AAA+:::U +::: ::+::::UCU: + +U :A 199623 UUUUUAUUUAUAUUGAAAAUUUUACAAAUAUUUAAAAUAAAAUAUUUUCUUCA-UUU-AA 199680 >>> 61 gac 63 :A: 199681 AAA 199683 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #697,emb|8254658| 337613 bp 4 contigs ----isReversed: 1 ----hitSequence: UUUUCUUGAAAUGAAAACUUAAAAUGAAACUAUAUUGAUUGAUUAUAAGUUUGAAUUCCAAGAUUA ----ssRNAplot: (((((......((((((((((((((.....(((....))).))))))))))))))......))))) ----hitGC: 0.19697 ----pairStats: 22,0,0,6 hit 64 : 18328 18263 (rev) 14.28 bits <<<<<---.--<<<<<<<<<<<<<<-----<<<___.>>>->>>>>>>>>>>>>>.---- 1 gucucuuu.uAUGAuGaccucagccuAAAccccucu.gggcggcugagguCuGAU.gccu 57 :+:UCUU A+GA::AC:U: :::+AAAC :: +U :: ::: :A:GU::GA+ CC 319286 UUUUCUUGaAAUGAAAACUUAAAAUGAAACUAUAUUgAUUGAUUAUAAGUUUGAAuUCCA 319345 ->>>>> 58 ggagac 63 GA:+: 319346 AGAUUA 319351 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #699,emb|8254659| 1557438 bp 6 contigs ----isReversed: 0 ----hitSequence: AAUUUUCUAUAAAUCUAUUAAAUUAAAAAUUUUAAAUAAUUAAAUAAAAGAAUUUUAAAUU ----ssRNAplot: (((((....((((((((((((((.....(((...))).))))))))))))))....))))) ----hitGC: 0.0491803 ----pairStats: 22,0,0,5 hit 65 : 169347 169407 (fwd) 14.64 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___>>>->>>>>>>>>>>>>>----->> 1 gucucuuuuAUGAuGaccucagccuAAAccccucugggcggcugagguCuGAUgccugga 60 :::U:U U A+ A: ::U: :::UAAA :::U++::: ::: :A:: :G + +U+:A 169347 AAUUUUCU-AUAAAUCUAUUAAAUUAAAAAUUUUAAAUAAUUAAAUAAAAGAA-UUUUAA 169404 >>> 61 gac 63 ::: 169405 AUU 169407 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #699,emb|8254659| 1557438 bp 6 contigs ----isReversed: 0 ----hitSequence: GUUUGAUUAUCAACAAAAAUCUCUAAAGCUUCUUCAUAAGACAUUAUUUUUAGCUUUUAGUCAUAC ----ssRNAplot: (((((....((((((((((((((.....(((......))).))))))))))))))......))))) ----hitGC: 0.257576 ----pairStats: 22,0,0,10 hit 66 : 721066 721131 (fwd) 15.45 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___...>>>->>>>>>>>>>>>>>---- 1 gucucuuuuAUGAuGaccucagccuAAAccccucu...gggcggcugagguCuGAUgccu 57 GU:U:+UU AU:A: A::: + : UAAA+C::++U ::G : + :::U :G:U + 721066 GUUUGAUU-AUCAACAAAAAUCUCUAAAGCUUCUUcauAAGACAUUAUUUUUAGCUUUUA 721124 -.>>>>> 58 g.gagac 63 G :A:AC 721125 GuCAUAC 721131 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #699,emb|8254659| 1557438 bp 6 contigs ----isReversed: 1 ----hitSequence: UAUUUUUGAUGAAAUAUUUAUAUUAAAGGAGUUUUUCAAAUGAAUAUUUUGAUGAUAUAUA ----ssRNAplot: (((((....((((((((((((((.....(((...)))..))))))))))))))...))))) ----hitGC: 0.147541 ----pairStats: 22,0,2,7 hit 67 : 1392275 1392215 (rev) 14.26 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___>>>-.>>>>>>>>>>>>>>-----> 1 gucucuuuuAUGAuGaccucagccuAAAccccucugggc.ggcugagguCuGAUgccugg 59 ::: :UU AUGA:: :: : :::UAAA+:: U+U :: ::: : :: ::GAU + U : 165164 UAUUUUUG-AUGAAAUAUUUAUAUUAAAGGAGUUUUUCAaAUGAAUAUUUUGAU-GAU-A 165220 >>>> 60 agac 63 ::: 165221 UAUA 165224 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #699,emb|8254659| 1557438 bp 6 contigs ----isReversed: 1 ----hitSequence: UUUAUUUUGUAUUAAAUUAAUUCUUAAAUGUUUAUAAUUAGAGUUUGAUUAAUUAGCUUAUAAA ----ssRNAplot: (((((......(((((((((((((.....(((...)))..)))))))))))).).....))))) ----hitGC: 0.125 ----pairStats: 22,1,4,4 hit 68 : 947256 947193 (rev) 15.05 bits <<<<<---.--<<<<<<<<<<<<<<-----<<<___>>>-.>>>>>>>>>>>>>>----- 1 gucucuuu.uAUGAuGaccucagccuAAAccccucugggc.ggcugagguCuGAUgccug 58 :U:::UUU UAU :::A::::+:::UAAA+ ::U U:: + :::+::::U::: U++CU+ 610183 UUUAUUUUgUAU-UAAAUUAAUUCUUAAAUGUUUAUAAUUaGAGUUUGAUUAAUUAGCUU 610241 >>>>> 59 gagac 63 :::A: 610242 AUAAA 610246 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #712,emb|8254803| 2216158 bp 20 contigs ----isReversed: 0 ----hitSequence: UUUAGAUAAUUAUAAUAACUAGGCAAAUAUUUAAAUGUUCGCUAGGUUUUUGUUUAUUUGUAAA ----ssRNAplot: (((((....((((((((((((((.....(((..)))....)))))))))))))).....))))) ----hitGC: 0.203125 ----pairStats: 22,0,0,8 hit 69 : 1323450 1323513 (fwd) 17.74 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___>>>.-..>>>>>>>>>>>>>>---- 1 gucucuuuuAUGAuGaccucagccuAAAccccucuggg.c..ggcugagguCuGAUgccu 57 :U::++U AU:AU:A : C:::+ AAA+:::U ::: + +:::G : U:UG:U +U 1323450 UUUAGAUA-AUUAUAAUAACUAGGCAAAUAUUUA-AAUgUucGCUAGGUUUUUGUUUAUU 1323507 ->>>>> 58 ggagac 63 ++::A: 1323508 UGUAAA 1323513 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #725,emb|8254807| 464229 bp 2 contigs ----isReversed: 0 ----hitSequence: UAUAUUUUAGUGAAAGGUACUUAUAAAAAUUACUAUGGAAAGUAUUUUGAAUUUUAAUAUA ----ssRNAplot: (((((.....((((((((((((((....(((..))).)))))))))))))).....))))) ----hitGC: 0.163934 ----pairStats: 22,0,3,4 hit 70 : 396038 396098 (fwd) 15.79 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___>>>-.>>>>>>>>>>>>>>-----. 1 gucucuuuuAUGAuGaccucagccuAAAccccucugggc.ggcugagguCuGAUgccug. 58 :::::UUU +GA::::::C:: : AAA :: C :: : ::G::::::GA+ +U+ 396038 UAUAUUUUAGUGAAAGGUACUUAUAAAA-AUUAC-UAU-gGAAAGUAUUUUGAA-UUUUa 396093 >>>>> 59 gagac 63 ::::: 396094 AUAUA 396098 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #725,emb|8254807| 464229 bp 2 contigs ----isReversed: 0 ----hitSequence: AUUUUUAAAUGAAAAAUAAAACCAAAAGUUUUAUUACAGGUUUUGUUUUGAGCUGCUAUAAUAU ----ssRNAplot: (((((....((((((((((((((....(((....))).)))))))))))))).......))))) ----hitGC: 0.203125 ----pairStats: 22,0,2,4 hit 71 : 444702 444765 (fwd) 21.68 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___.>>>-.>>>>>>>>>>>>>>..--- 1 gucucuuuuAUGAuGaccucagccuAAAccccucu.gggc.ggcugagguCuGAU..gcc 56 :U:U:U A+GA::A::::A:CC AAA :: U++ :: GG:U::::U::GA+ GC+ 444702 AUUUUUAA-AUGAAAAAUAAAACCAAAA-GUUUUAuUAC-aGGUUUUGUUUUGAGcuGCU 444758 -->>>>> 57 uggagac 63 +:A:A: 444759 AUAAUAU 444765 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #725,emb|8254807| 464229 bp 2 contigs ----isReversed: 0 ----hitSequence: UAUUCGUUAUUAGGAUCUAAUUUUAAAGCUUCUUCUAGGUCAGAUUUGGCAUUGAAAA ----ssRNAplot: (((((....((((((((((((((....(((..))).))))))))))))))...))))) ----hitGC: 0.293103 ----pairStats: 22,0,5,6 hit 72 : 445199 445256 (fwd) 13.96 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___>>>-.>>>>>>>>>>>>>>-----> 1 gucucuuuuAUGAuGaccucagccuAAAccccucugggc.ggcugagguCuGAUgccugg 59 : :UC UU A :A::A:CU:A:::UAAA :: UC :: :::U:AG:U::G: +U G 445199 UAUUCGUU-AUUAGGAUCUAAUUUUAAA-GCUUC-UUC-uAGGUCAGAUUUGGC-AUU-G 445252 >>>> 60 agac 63 A: : 445253 AAAA 445256 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #725,emb|8254807| 464229 bp 2 contigs ----isReversed: 1 ----hitSequence: CUAAUUUUAUGAAAAUAUUUAUUUAAAAAUCCAAAAAGUAGUAUUUGAUUAUAUAAUAAG ----ssRNAplot: (((((....((((((((((((((....(((..)))))))))))))))))......))))) ----hitGC: 0.133333 ----pairStats: 22,0,1,8 hit 73 : 66034 65975 (rev) 15.01 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___>>>->>>>>>>>>>>>>>-----.> 1 gucucuuuuAUGAuGaccucagccuAAAccccucugggcggcugagguCuGAUgccug.g 59 :U:::UUU AUGA::A:: :+ ::UAAA :+C : :: +: ::U::GAU + + : 398196 CUAAUUUU-AUGAAAAUAUUUAUUUAAA-AAUCC-AAA-AAGUAGUAUUUGAUUAUAUaA 398251 >>>> 60 agac 63 ::A: 398252 UAAG 398255 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #730,emb|8253860| 3671 bp 2 contigs ----isReversed: 1 ----hitSequence: UUAUUAUUUAAUGAACAAUAAUUUCCAAAUUCUUUAAGAAAAUUAUUAAGAGUUUUUAAAAA ----ssRNAplot: (((((......((((((((((((((....(((...))))))))))))))))).....))))) ----hitGC: 0.129032 ----pairStats: 22,0,2,7 hit 74 : 2254 2193 (rev) 15.00 bits <<<<<---.--<<<<<<<<<<<<<<-----<<<___>>>->>>>>>>>>>>>>>-----> 1 gucucuuu.uAUGAuGaccucagccuAAAccccucugggcggcugagguCuGAUgccugg 59 :U:U:+UU A+GA: A::::::: AAA :: U+U :: :::::::U :GA+ +U+: 1418 UUAUUAUUuAAUGAACAAUAAUUUCCAAA-UUCUUUAAG-AAAAUUAUUAAGAGUUUUUA 1475 >>>> 60 agac 63 A:A: 1476 AAAA 1479 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #733,emb|8254663| 210363 bp 3 contigs ----isReversed: 1 ----hitSequence: UUACCAUUAUUAAAACAUCAUAUAAAAAGGCUCCGCCUGUAUCAUGUAUGUAAUUUAAUAA ----ssRNAplot: (((((....((((((((((((((.....(((...))).))))))))))))))....))))) ----hitGC: 0.262295 ----pairStats: 22,0,1,6 hit 75 : 204603 204543 (rev) 14.16 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___>>>->>>>>>>>>>>>>>----->> 1 gucucuuuuAUGAuGaccucagccuAAAccccucugggcggcugagguCuGAUgccugga 60 :U +UU A+:A::AC:U A::: AAA ::CUC+G::+:::U A:GU::G:+ +U+ 5761 UUACCAUU-AUUAAAACAUCAUAUAAAAAGGCUCCGCCUGUAUCAUGUAUGUA-AUUUAA 5818 >>> 61 gac 63 A: 5819 UAA 5821 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #736,emb|8254664| 501920 bp 2 contigs ----isReversed: 0 ----hitSequence: UAUAUUUUUAUGAAAGUAUUUGAUAAAAAAUCAAAAAGUACUAUCUAUUAUUAGAUAAUUGUACAUUUA ----ssRNAplot: (((((.....((((((((((((((.....(((.....)))..))))))))))))))........))))) ----hitGC: 0.144928 ----pairStats: 22,0,1,9 hit 76 : 367624 367692 (fwd) 15.22 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___..>>>-.>>>>>>>>>>>>>>---- 1 gucucuuuuAUGAuGaccucagccuAAAccccucu..gggc.ggcugagguCuGAUgccu 57 :::::UUUUAUGA::::: :+G:: AAA C + G C ::C+: :::::GAU+ +U 367624 UAUAUUUUUAUGAAAGUAUUUGAUAAAAAAUCAAAaaGUACuAUCUAUUAUUAGAUAAUU 367683 -...>>>>> 58 g...gagac 63 G ::::: 367684 GuacAUUUA 367692 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #736,emb|8254664| 501920 bp 2 contigs ----isReversed: 1 ----hitSequence: UUCAUUUAAUGAUUUUUUGAAUCUAAACGCACAAAGCGAGUUUCAAGAAUGAAAAUAAAAUGUA ----ssRNAplot: (((((....((((((((((((((....(((.....))).))))))))))))))......))))) ----hitGC: 0.25 ----pairStats: 22,0,1,5 hit 77 : 89158 89095 (rev) 16.80 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___..>>>-.>>>>>>>>>>>>>>---- 1 gucucuuuuAUGAuGaccucagccuAAAccccucu..gggc.ggcugagguCuGAUgccu 57 :+C::UU A+GAU :::U:A: CUAAA C:C C+ G:G G :U:A::: UGA++ + 412763 UUCAUUUA-AUGAUUUUUUGAAUCUAAA-CGCACAaaGCG-aGUUUCAAGAAUGAAAAUA 412819 -.>>>>> 58 g.gagac 63 ::G+: 412820 AaAUGUA 412826 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #739,emb|8254665| 877599 bp 13 contigs ----isReversed: 0 ----hitSequence: UUCUUAUUAUGAAAGGAUUUGAAAAAAAUAUUAAUUUGAUUCAAACUAUUGAUUACAAAAGAA ----ssRNAplot: (((((....((((((((((((((.....(((....))).)))))))))))))).....))))) ----hitGC: 0.174603 ----pairStats: 22,0,2,6 hit 78 : 548325 548387 (fwd) 14.46 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___.>>>->>>>>>>>>>>>>>.----- 1 gucucuuuuAUGAuGaccucagccuAAAccccucu.gggcggcugagguCuGAU.gccug 58 :UCU:+UU AUGA:: : U::G:: AAA :: U + :: ::C::A : ::GAU +C 548325 UUCUUAUU-AUGAAAGGAUUUGAAAAAAAUAUUAAuUUGAUUCAAACUAUUGAUuACAA- 548382 >>>>> 59 gagac 63 :AGA: 548383 AAGAA 548387 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #739,emb|8254665| 877599 bp 13 contigs ----isReversed: 1 ----hitSequence: UUGAAUUUAUAAAUAAUAUUAAUUAAAGAAGUCUACUUUUAUUAUACUUAGAAAGCUUUUGAA ----ssRNAplot: (((((....((((((((((((((.....(((....))).)))))))))))))).....))))) ----hitGC: 0.15873 ----pairStats: 22,0,0,9 hit 79 : 295335 295273 (rev) 15.45 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___.>>>->>>>>>>>>>>>>>-----> 1 gucucuuuuAUGAuGaccucagccuAAAccccucu.gggcggcugagguCuGAUgccugg 59 :U+::UUU A+ A: A::::+: UAAA+:::UCU :::+ :+::::U :G +++CU+: 582265 UUGAAUUU-AUAAAUAAUAUUAAUUAAAGAAGUCUaCUUUUAUUAUACUUAGAAAGCUUU 582323 >>>> 60 agac 63 :+A: 582324 UGAA 582327 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #745,emb|8254667| 356833 bp 5 contigs ----isReversed: 0 ----hitSequence: AAGUUUUUGUAUGAUAAAAAAUGAUAAAAUUUUUAAAGAAUUCCAUUUCUGAUUAAGUAGUAACUU ----ssRNAplot: (((((......((((((((((((((.....(((..))).))))))))))))))........))))) ----hitGC: 0.181818 ----pairStats: 22,0,2,8 hit 80 : 123520 123585 (fwd) 17.72 bits <<<<<---.--<<<<<<<<<<<<<<-----<<<___>>>->>>>>>>>>>>>>>..---- 1 gucucuuu.uAUGAuGaccucagccuAAAccccucugggcggcugagguCuGAU..gccu 57 :::U:UUU UAUGAU:A:: :++:: AAA+:::U ::: ::++: ::U:UGAU +++ 123520 AAGUUUUUgUAUGAUAAAAAAUGAUAAAAUUUUUA-AAGAAUUCCAUUUCUGAUuaAGUA 123578 -.>>>>> 58 g.gagac 63 G :A::: 123579 GuAACUU 123585 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #756,emb|8254810| 55393 bp 5 contigs ----isReversed: 0 ----hitSequence: UUUUUAUUAUUAAAAAAAUAGAUUUAAAAUCUAAUACAAGAAUUUAUUUUUAAAGUUAGAAAAA ----ssRNAplot: (((((....((((((((((((((......(((.....))).))))))))))))))....))))) ----hitGC: 0.09375 ----pairStats: 22,0,3,3 hit 81 : 52755 52818 (fwd) 14.26 bits <<<<<-----<<<<<<<<<<<<<<.-----<<<___..>>>->>>>>>>>>>>>>>---- 1 gucucuuuuAUGAuGaccucagcc.uAAAccccucu..gggcggcugagguCuGAUgccu 57 :U:U:+UU A+: ::A::::A+:: UAAA ::: U ::: ::+U::::U:: :+ + 52755 UUUUUAUU-AUUAAAAAAAUAGAUuUAAAAUCUAAUacAAGAAUUUAUUUUUAAAG-UUA 52812 ->>>>> 58 ggagac 63 G:A:A: 52813 GAAAAA 52818 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #758,emb|8254811| 1389364 bp 15 contigs ----isReversed: 1 ----hitSequence: GUUUUUUUUAUGAUUUUAAAAAAUUAAAGAUUAUUUAUUUACUAUUCAAAAGAUUUUUAAAUU ----ssRNAplot: (((((.....((((((((((((((.....(((....))).))))))))))))))....))))) ----hitGC: 0.0952381 ----pairStats: 22,0,1,8 hit 82 : 418242 418180 (rev) 14.99 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___.>>>->>>>>>>>>>>>>>-----> 1 gucucuuuuAUGAuGaccucagccuAAAccccucu.gggcggcugagguCuGAUgccugg 59 :+:U:UUUUAUGA :: :: : :UAAA+: : +U : :+: : :: :: GAU +U+: 971123 GUUUUUUUUAUGAUUUUAAAAAAUUAAAGAUUAUUuAUUUACUAUUCAAAAGAU-UUUUA 971181 >>>> 60 agac 63 A:+: 971182 AAUU 971185 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #765,emb|8254814| 591214 bp 5 contigs ----isReversed: 0 ----hitSequence: AUUUUAUUUGUUAUCAAAAAAAGUCAAAUCAUUUUAUAAGCUAUUUUUUUGUUCAUAAAAAU ----ssRNAplot: (((((.....((((((((((((((.....(((...))).))))))))))))))....))))) ----hitGC: 0.145161 ----pairStats: 22,0,1,7 hit 83 : 427455 427516 (fwd) 14.33 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___>>>->>>>>>>>>>>>>>----->> 1 gucucuuuuAUGAuGaccucagccuAAAccccucugggcggcugagguCuGAUgccugga 60 :U:U:+UUU U:AU A:::: ::: AAA+ ::U+U:: ::: ::::U UG:U C U :A 427455 AUUUUAUUUGUUAUCAAAAAAAGUCAAAUCAUUUUAUAAGCUAUUUUUUUGUU-CAUAAA 427513 >>> 61 gac 63 :A: 427514 AAU 427516 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #765,emb|8254814| 591214 bp 5 contigs ----isReversed: 1 ----hitSequence: UAUUUUUGAUGAUAAAAAUUAAUUAAAAUUAUAAAUUUUAAUUUUUUUUUUUAUUUAAAUA ----ssRNAplot: (((((....((((((((((((((....(((...)))))))))))))))))......))))) ----hitGC: 0.0327869 ----pairStats: 22,0,1,3 hit 84 : 317325 317265 (rev) 17.93 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___>>>->>>>>>>>>>>>>>.-----> 1 gucucuuuuAUGAuGaccucagccuAAAccccucugggcggcugagguCuGAU.gccugg 59 :::U:UU AU U:A::::::: UAAA ::: ++::: :::::::U:U U +U+: 273890 UAUUUUUG-AUGAUAAAAAUUAAUUAAA-AUUAUAAAU-UUUAAUUUUUUUUUuUAUUUA 273946 >>>> 60 agac 63 A::: 273947 AAUA 273950 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #765,emb|8254814| 591214 bp 5 contigs ----isReversed: 1 ----hitSequence: AAUACUCCUUAUUAGAUUAUUUUAUGAAAUAAAAUUUUCAUAAAAUAAUUGAUCCUUACAUU ----ssRNAplot: (((((......((((((((((((((.....(((..))).))))))))))))))....))))) ----hitGC: 0.16129 ----pairStats: 22,0,1,4 hit 85 : 299695 299634 (rev) 15.08 bits <<<<<---.--<<<<<<<<<<<<<<-----<<<___>>>->>>>>>>>>>>>>>-----> 1 gucucuuu.uAUGAuGaccucagccuAAAccccucugggcggcugagguCuGAUgccugg 59 ::: U + UAU:A:::::U:::::+AAA+::: + :::C:::::A:::::G:U CCU+ 291520 AAUACUCCuUAUUAGAUUAUUUUAUGAAAUAAAAU-UUUCAUAAAAUAAUUGAU-CCUUA 291577 >>>> 60 agac 63 ::: 291578 CAUU 291581 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #765,emb|8254814| 591214 bp 5 contigs ----isReversed: 1 ----hitSequence: UACUCCUUAUUAGAUUAUUUUAUGAAAUAAAAUUUUCAUAAAAUAAUUGAUCCUUACAUAGGA ----ssRNAplot: (((((....((((((((((((((.....(((..))).)))))))))))))).......))))) ----hitGC: 0.190476 ----pairStats: 22,0,1,4 hit 86 : 291865 291803 (rev) 19.99 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___>>>->>>>>>>>>>>>>>-----.. 1 gucucuuuuAUGAuGaccucagccuAAAccccucugggcggcugagguCuGAUgccug.. 58 ::CU UU AU:A:::::U:::::+AAA+::: + :::C:::::A:::::G:U CCU+ 299350 UACUCCUU-AUUAGAUUAUUUUAUGAAAUAAAAU-UUUCAUAAAAUAAUUGAU-CCUUac 299406 .>>>>> 59 .gagac 63 AG:: 299407 aUAGGA 299412 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #768,emb|8254815| 909308 bp 16 contigs ----isReversed: 0 ----hitSequence: AAGGUUGAAAUGAUGGAAAUUAAUUAAAGUUUUUUAAUACUUGUUCACAACCUGAUGGAUGAUCAU ----ssRNAplot: (((((.....((((((((((((((.....(((....)))...)))))))))))))).....))))) ----hitGC: 0.272727 ----pairStats: 22,0,2,10 hit 87 : 816190 816255 (fwd) 13.96 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___.>>>-..>>>>>>>>>>>>>>---- 1 gucucuuuuAUGAuGaccucagccuAAAccccucu.gggc..ggcugagguCuGAUgccu 57 : :::U AUGAUG: :+:::UAAA+: :U+U : :C :::+: :CUGAUG+ U 816190 AAGGUUGAAAUGAUGGAAAUUAAUUAAAGUUUUUUaAUACuuGUUCACAACCUGAUGGAU 816249 ->>>>> 58 ggagac 63 G::: : 816250 GAUCAU 816255 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #768,emb|8254815| 909308 bp 16 contigs ----isReversed: 1 ----hitSequence: AUUAUCUUAUGAAAAACUUUUUUUAAAAGUAUUUUCAAAACAUUUUUAUGAUCAUUUUAUAAU ----ssRNAplot: (((((....((((((((((((((.....(((..)))..))))))))))))))......))))) ----hitGC: 0.126984 ----pairStats: 22,0,0,9 hit 88 : 890959 890897 (rev) 14.27 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___>>>-.>>>>>>>>>>>>>>.----- 1 gucucuuuuAUGAuGaccucagccuAAAccccucugggc.ggcugagguCuGAU.gccug 58 :U::: UU AUGA::A:: : ::UAAA : :U+ : : :: : ::U::GAU + +U+ 18350 AUUAUCUU-AUGAAAAACUUUUUUUAAAAGUAUU-UUCAaAACAUUUUUAUGAUcAUUUU 18407 >>>>> 59 gagac 63 :::A: 18408 AUAAU 18412 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #768,emb|8254815| 909308 bp 16 contigs ----isReversed: 1 ----hitSequence: UUUUAAUUAAUUAAACCAAUAUUAAAAACAAAAUAACAUUGAAUAUUGAUUGAUUGAUAUUAAAA ----ssRNAplot: (((((.....((((((((((((((.....(((....))).))))))))))))))......))))) ----hitGC: 0.123077 ----pairStats: 22,0,0,6 hit 89 : 873538 873474 (rev) 14.17 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___.>>>->>>>>>>>>>>>>>.----- 1 gucucuuuuAUGAuGaccucagccuAAAccccucu.gggcggcugagguCuGAU.gccug 58 :U:U:+UU AU:A:: C:::A::: AAAC: ++ :+:::U:::G ::G:U G + + 35771 UUUUAAUUAAUUAAACCAAUAUUAAAAACAAAAUAaCAUUGAAUAUUGAUUGAUuGAUAU 35830 >>>>> 59 gagac 63 :A:A: 35831 UAAAA 35835 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #768,emb|8254815| 909308 bp 16 contigs ----isReversed: 1 ----hitSequence: AAUAAAUUUAUAAAAAAAUCUAUUAAAAUUUUUAAUUAAGUAAUUAAUUUUUGUUUUAUUUUUU ----ssRNAplot: (((((.....((((((((((((((.....(((.....))).))))))))))))))....))))) ----hitGC: 0.046875 ----pairStats: 22,0,1,5 hit 90 : 560992 560929 (rev) 14.59 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___..>>>->>>>>>>>>>>>>>----- 1 gucucuuuuAUGAuGaccucagccuAAAccccucu..gggcggcugagguCuGAUgccug 58 :::::+UUUAU A::A::U +::: AAA+:::U + :::+:::+ A::U::G U + + 348317 AAUAAAUUUAUAAAAAAAUCUAUUAAAAUUUUUAAuuAAGUAAUUAAUUUUUGUU-UUAU 348375 >>>>> 59 gagac 63 ::::: 348376 UUUUU 348380 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #768,emb|8254815| 909308 bp 16 contigs ----isReversed: 1 ----hitSequence: UUAUUAUCAUAAAAAUCUAAACAAAGCUUUUCAAGAUUUGUUUAGCUUUGAAUACUUUAAAAUA ----ssRNAplot: (((((....(((((((((((((....(((...)))....))))))))))))).......))))) ----hitGC: 0.1875 ----pairStats: 22,1,0,5 hit 91 : 384906 384843 (rev) 14.56 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___>>>.->.>>>>>>>>>>>>>.---- 1 gucucuuuuAUGAuGaccucagccuAAAccccucuggg.cg.gcugagguCuGAU.gccu 57 :+:U:+U+ A+ A::A CU:A:C AAA+C::U++::G + G:U:AG U::G + +C+U 524403 UUAUUAUC-AUAAAAAUCUAAAC--AAAGCUUUUCAAGaUUuGUUUAGCUUUGAAuACUU 524459 -.>>>>> 58 g.gagac 63 + :A:+: 524460 UaAAAUA 524466 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #782,emb|8254819| 1807540 bp 14 contigs ----isReversed: 0 ----hitSequence: UAUUUUUUAUGAUAUUAUUAAUGAAAUAUCAAAAAUAUAUUUAUAAUAGAUUUAUAAACA ----ssRNAplot: (((((....((((((((((((((...(((.....)))))))))))))))))....))))) ----hitGC: 0.0833333 ----pairStats: 22,0,1,5 hit 92 : 595398 595457 (fwd) 14.45 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___..>>>->>>>>>>>>>>>>>----- 1 gucucuuuuAUGAuGaccucagccuAAAccccucu..gggcggcugagguCuGAUgccug 58 : :U:UUU AUGA ::::U A:: AAA :::+ + ::: ::U A:::: GAU + + 595398 UAUUUUUU-AUGAUAUUAUUAAUG-AAA-UAUCAAaaAUA-UAUUUAUAAUAGAU-UUAU 595452 >>>>> 59 gagac 63 :A: : 595453 AAACA 595457 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #782,emb|8254819| 1807540 bp 14 contigs ----isReversed: 0 ----hitSequence: AACUUACUAAUGAGAAAUUUAACUUAAAUUUUAUAUGUUAUUCAGUUAUGAAUUUUACAAAGUU ----ssRNAplot: (((((.....((((((((((((((.....(((..))).)))))))))))))).......))))) ----hitGC: 0.171875 ----pairStats: 22,0,3,7 hit 93 : 958976 959039 (fwd) 16.83 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___>>>->>>>>>>>>>>>>>-----.. 1 gucucuuuuAUGAuGaccucagccuAAAccccucugggcggcugagguCuGAUgccug.. 58 ::CU:+ U A+GA::A::U A:: UAAA+: : + : :+ ::U A::U::GA+ +U+ 958976 AACUUACUAAUGAGAAAUUUAACUUAAAUUUUAU-AUGUUAUUCAGUUAUGAA-UUUUac 959033 .>>>>> 59 .gagac 63 :AG:: 959034 aAAGUU 959039 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #782,emb|8254819| 1807540 bp 14 contigs ----isReversed: 0 ----hitSequence: GAUUUUGUAAUGUAAUUUUCUAUUAAAAUUUAUUUUUAAAUUUGAUCGAAAGUUGAAUCCCAAAUU ----ssRNAplot: (((((.....((((((((((((((.....(((....)))....))))))))))))))....))))) ----hitGC: 0.181818 ----pairStats: 22,0,4,2 hit 94 : 1092346 1092411 (fwd) 14.71 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___.>>>.-..>>>>>>>>>>>>>>--- 1 gucucuuuuAUGAuGaccucagccuAAAccccucu.ggg.c..ggcugagguCuGAUgcc 56 :::U:U U A+G::: ::UC+::: AAA+:::U+U ::: + :::+GA:: :::A+ CC 1092346 GAUUUUGUAAUGUAAUUUUCUAUUAAAAUUUAUUUuUAAaUuuGAUCGAAAGUUGAAUCC 1092405 -->>>>> 57 uggagac 63 + :A::: 1092406 C-AAAUU 1092411 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #782,emb|8254819| 1807540 bp 14 contigs ----isReversed: 0 ----hitSequence: UUAUUUUCAAAUGAAAUUUAUAAUUCAAACUUUUUAAUUUUUAUAUUUAGAUUUUGUUAAAAA ----ssRNAplot: (((((......((((((((((((((....(((...)))))))))))))))))......))))) ----hitGC: 0.0952381 ----pairStats: 22,0,0,10 hit 95 : 1264735 1264797 (fwd) 14.57 bits <<<<<---.--<<<<<<<<<<<<<<-----<<<___>>>->>>>>>>>>>>>>>-----. 1 gucucuuu.uAUGAuGaccucagccuAAAccccucugggcggcugagguCuGAUgccug. 58 :U:U:UU+ AUGA:: :::A: AAA ::U+U:: :U::: ::GAU +UG 1264735 UUAUUUUCaAAUGAAAUUUAUAAUUCAAA-CUUUUUAAU-UUUUAUAUUUAGAU-UUUGu 1264791 .>>>>> 59 .gagac 63 :A:A: 1264792 uAAAAA 1264797 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #782,emb|8254819| 1807540 bp 14 contigs ----isReversed: 0 ----hitSequence: GUUUAGUCAUGUUAAAAUUAUUUUUUAAAUAUUUUAAAGUUUAAAAUAAUUUGUAAUUUUUAAUU ----ssRNAplot: (((((......((((((((((((((.....(((...)))..)))))))))))))).....))))) ----hitGC: 0.0923077 ----pairStats: 22,0,1,5 hit 96 : 1334175 1334239 (fwd) 15.71 bits <<<<<---.--<<<<<<<<<<<<<<-----<<<___>>>-.>>>>>>>>>>>>>>----- 1 gucucuuu.uAUGAuGaccucagccuAAAccccucugggc.ggcugagguCuGAUgccug 58 :+:U: U+ U +:A::A::::::: UAAA+ ::U++:: + :::::::U::G:++ +U+ 1334175 GUUUAGUCaUGUUAAAAUUAUUUUUUAAAUAUUUUAAAGUuUAAAAUAAUUUGUAAUUUU 1334234 >>>>> 59 gagac 63 :A:+: 1334235 UAAUU 1334239 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #782,emb|8254819| 1807540 bp 14 contigs ----isReversed: 0 ----hitSequence: UUUUUUUUAAUGAAAAUUAAAAUAAACUAAUUCUAUUGAAAUUUAAUUAGAUCUAAAAA ----ssRNAplot: (((((.....(((((((((((((....(((.....))).)))))))))))))..))))) ----hitGC: 0.101695 ----pairStats: 22,1,1,5 hit 97 : 1351791 1351849 (fwd) 15.79 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___..>>>->>>>>>>>>>>>>>----- 1 gucucuuuuAUGAuGaccucagccuAAAccccucu..gggcggcugagguCuGAUgccug 58 :U:U:UUU AUGA::A::::A : AAAC:::U++ ::: : U::::U::GAU C+ 1351791 UUUUUUUUAAUGAAAAUUAAAAU--AAACUAAUUCuaUUGA-AAUUUAAUUAGAU-CU-- 1351844 >>>>> 59 gagac 63 :A:A: 1351845 AAAAA 1351849 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #782,emb|8254819| 1807540 bp 14 contigs ----isReversed: 1 ----hitSequence: AGUUCUCAAAUGAUAGCACUACUGCAAACCCUAGCGGGACAGUAGUGCUUGAAAAUACCUGAGAAUU ----ssRNAplot: (((((.....((((((((((((((.....(((...))).)))))))))))))).........))))) ----hitGC: 0.41791 ----pairStats: 22,0,2,3 hit 98 : 1636805 1636739 (rev) 21.31 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___>>>->>>>>>>>>>>>>>...---- 1 gucucuuuuAUGAuGaccucagccuAAAccccucugggcggcugagguCuGAU...gccu 57 : :UCU A+GAU::C:::A:: AAACCC + GG ::U:::G::UGA+ +CCU 170736 AGUUCUCAAAUGAUAGCACUACUGCAAACCCUAGCGGGACAGUAGUGCUUGAAaauACCU 170795 -.>>>>> 58 g.gagac 63 G GA: : 170796 GaGAAUU 170802 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #806,emb|8254820| 310539 bp 4 contigs ----isReversed: 0 ----hitSequence: GUUUUUUGAUGAAGAUUCUAUUUUAAAAAUACAUGGAGGAAAGAGUGAUUUUGAAUAC ----ssRNAplot: (((((....((((((((((((((....(((..)))))))))))))))))....))))) ----hitGC: 0.258621 ----pairStats: 22,0,3,9 hit 99 : 141124 141181 (fwd) 14.35 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___>>>->>>>>>>>>>>>>>----->> 1 gucucuuuuAUGAuGaccucagccuAAAccccucugggcggcugagguCuGAUgccugga 60 GU:U:UU AUGA: :: : :::UAAA :: C :: ::: : :: :GAU +UG:A 141124 GUUUUUUG-AUGAAGAUUCUAUUUUAAA-AAUAC-AUG-GAGGAAAGAGUGAU-UUUGAA 141178 >>> 61 gac 63 :AC 141179 UAC 141181 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #810,emb|8254822| 203516 bp 10 contigs ----isReversed: 1 ----hitSequence: GUUUUUUAAUGAAGAAAUCUAACUCAAUUUUUCAUCAAAAAUUUAAUUUUUAGAGUUAAAAAU ----ssRNAplot: (((((....((((((((((((((.....(((.....)))..))))))))))))))...))))) ----hitGC: 0.15873 ----pairStats: 22,0,3,6 hit 100 : 77872 77810 (rev) 14.19 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___..>>>-.>>>>>>>>>>>>>>---- 1 gucucuuuuAUGAuGaccucagccuAAAccccucu..gggc.ggcugagguCuGAUgccu 57 :U:U:UU A+GA::A:: ::: U AA+:::UC+ ::: ::: ::U::GA+ + 125645 GUUUUUUA-AUGAAGAAAUCUAACUCAAUUUUUCAucAAAAaUUUAAUUUUUAGAG-UUA 125702 ->>>>> 58 ggagac 63 :A:A: 125703 -AAAAU 125707 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #812,emb|8254823| 461832 bp 8 contigs ----isReversed: 1 ----hitSequence: UAAGUUUAAUGACGUUGAUUGACAAAACUCGAGAGAGAGUCUCUCAACUGAAUAUAUAAUAGA ----ssRNAplot: (((((....((((((((((((((....(((....))).))))))))))))))......))))) ----hitGC: 0.31746 ----pairStats: 22,0,1,7 hit 101 : 100276 100214 (rev) 16.31 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___..>>>-.>>>>>>>>>>>>>>---- 1 gucucuuuuAUGAuGaccucagccuAAAccccucu..gggc.ggcugagguCuGAUgccu 57 :::::UU A+GA:G:::: +G:C AAA C:C G:G G:C+ ::::C:GA+ + 361557 UAAGUUUA-AUGACGUUGAUUGACAAAA-CUCGA-gaGAG-aGUCUCUCAACUGAAUAUA 361612 -.>>>>> 58 g.gagac 63 + ::::: 361613 UaAUAGA 361619 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #815,emb|8254824| 137162 bp 2 contigs ----isReversed: 1 ----hitSequence: GUUAAAUUGUGAUAAUUUCUUAUUUAAAUCUAUUAAAUAAAUUAAAAUUUGAAUAUUUGAUAAU ----ssRNAplot: (((((....(((((((((.(((((....(((...)))..))))))))))))))......))))) ----hitGC: 0.109375 ----pairStats: 22,0,1,6 hit 102 : 11397 11334 (rev) 14.38 bits <<<<<-----<<<<<<<<<.<<<<<-----<<<___>>>-.>>>>>>>>>>>>>>.---- 1 gucucuuuuAUGAuGaccu.cagccuAAAccccucugggc.ggcugagguCuGAU.gccu 57 :U:: +UU +GAU:A::U :+:::UAAA ::: +U:::+ :::+:A::U:UGA+ + +U 125766 GUUAAAUU-GUGAUAAUUUcUUAUUUAAA-UCUAUUAAAUaAAUUAAAAUUUGAAuAUUU 125823 ->>>>> 58 ggagac 63 G ::A: 125824 GAUAAU 125829 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #815,emb|8254824| 137162 bp 2 contigs ----isReversed: 1 ----hitSequence: UAUGAAUUAUGCUGAUGAUUAAUUAAGAUUUACGAUAUUUAUAAUUUAAUAUUCUUCAGA ----ssRNAplot: (((((....((((((((((((((....(((...))))))))))))))))).....))))) ----hitGC: 0.183333 ----pairStats: 22,0,2,7 hit 103 : 5140 5081 (rev) 14.96 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___>>>->>>>>>>>>>>>>>----->> 1 gucucuuuuAUGAuGaccucagccuAAAccccucugggcggcugagguCuGAUgccugga 60 :::::+UU AUG:U:A: ::+:::UAA :: U + :: :::+:: :U:U:AU+ +++:: 132023 UAUGAAUU-AUGCUGAUGAUUAAUUAAG-AUUUACGAU-AUUUAUAAUUUAAUAUUCUUC 132079 >>> 61 gac 63 ::: 132080 AGA 132082 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #842,emb|8254686| 541833 bp 6 contigs ----isReversed: 0 ----hitSequence: UUUUUUUUAAAUUAAAAUAAUUAUUUUAAUAAUUAAUUCUAUGAUAAUUUGAUAUUUUAAGUA ----ssRNAplot: (((((......((((((((((((((.....(((..))).)))))))))))))).....))))) ----hitGC: 0.0634921 ----pairStats: 22,0,2,5 hit 104 : 539910 539972 (fwd) 14.10 bits <<<<<---.--<<<<<<<<<<<<<<-----<<<___>>>->>>>>>>>>>>>>>-----> 1 gucucuuu.uAUGAuGaccucagccuAAAccccucugggcggcugagguCuGAUgccugg 59 :+:U:UUU AU:A::A: ::+:: U AA+:::U :::C ::+:: :U::G:U+ +U+: 539910 UUUUUUUUaAAUUAAAAUAAUUAUUUUAAUAAUUA-AUUCUAUGAUAAUUUGAUAUUUUA 539968 >>>> 60 agac 63 A:+: 539969 AGUA 539972 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #852,emb|8253889| 1510 bp 1 contigs ----isReversed: 0 ----hitSequence: AUUUCAUUUAUUAUUUUUGAAAAAUAAAUAACUAUGUUAAAGUUUUUAAGAUGUAUUUUAAAAU ----ssRNAplot: (((((.....((((((((((((((.....(((...)))...))))))))))))))....))))) ----hitGC: 0.109375 ----pairStats: 22,0,2,5 hit 105 : 674 737 (fwd) 16.59 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___>>>-..>>>>>>>>>>>>>>----- 1 gucucuuuuAUGAuGaccucagccuAAAccccucugggc..ggcugagguCuGAUgccug 58 :U:U +UUUA+:AU :: :A:::UAAA+::CU UG:: :::U: :: UG:+ +U+ 674 AUUUCAUUUAUUAUUUUUGAAAAAUAAAUAACUAUGUUAaaGUUUUUAAGAUGUA-UUUU 732 >>>>> 59 gagac 63 A:A: 733 AAAAU 737 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #893,emb|8253894| 215179 bp 2 contigs ----isReversed: 0 ----hitSequence: UUUAUUUAAUGGUGAUUAAAUAUGAAAUUAUAAUUAAUAUUUAAUCAAAUAUUUUUAAUUAA ----ssRNAplot: (((((....((((((((((((((....(((...))))))))))))))))).......))))) ----hitGC: 0.0806452 ----pairStats: 22,0,0,5 hit 106 : 31535 31596 (fwd) 17.24 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___>>>->>>>>>>>>>>>>>-----.. 1 gucucuuuuAUGAuGaccucagccuAAAccccucugggcggcugagguCuGAUgccug.. 58 :U:::UU AUG GA::::A:::+AAA : :U +: : :::U::::UC AU+ +U+ 31535 UUUAUUUA-AUGGUGAUUAAAUAUGAAA-UUAUAAUUA-AUAUUUAAUCAAAUAUUUUua 31591 >>>>> 59 gagac 63 :::A: 31592 AUUAA 31596 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #893,emb|8253894| 215179 bp 2 contigs ----isReversed: 1 ----hitSequence: UUUUUAUAAUGAGAAAAUUAAUUAAAAUAUAUUUAUAUUAAUGAAUUUUACAAUUAUUAAAUC ----ssRNAplot: (((((....((((((((((((((.....(((....))).)))))))))))))).....))))) ----hitGC: 0.0793651 ----pairStats: 22,0,0,6 hit 107 : 147583 147521 (rev) 14.26 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___.>>>->>>>>>>>>>>>>>-----. 1 gucucuuuuAUGAuGaccucagccuAAAccccucu.gggcggcugagguCuGAUgccug. 58 +:U:+U A+G :A::U: ::: AAA+:::U+U :::+::: :A::U: A+ + + 67597 UUUUUAUA-AUGAGAAAAUUAAUUAAAAUAUAUUUaUAUUAAUGAAUUUUACAA-UUAUu 67654 >>>>> 59 gagac 63 :A:+ 67655 AAAUC 67659 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #895,emb|8254697| 1227316 bp 10 contigs ----isReversed: 1 ----hitSequence: UACUCUUUAUAUUAUUAAUUAUUUAAAUUAAUUUAAUAAUUAUUAUUAUUUAAUAUGAGUA ----ssRNAplot: (((((....((((((((((((((....(((...))).)))))))))))))).....))))) ----hitGC: 0.0655738 ----pairStats: 22,0,0,4 hit 108 : 1134954 1134894 (rev) 14.33 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___>>>-.>>>>>>>>>>>>>>-----> 1 gucucuuuuAUGAuGaccucagccuAAAccccucugggc.ggcugagguCuGAUgccugg 59 ::CUCUUU AU : : ::::+:::UAAA ::: +U::: :::+:::: : : U+ + +G 92363 UACUCUUU-AUAUUAUUAAUUAUUUAAA-UUAAUUUAA-uAAUUAUUAUUAUUUAAUAUG 92419 >>>> 60 agac 63 AG:: 92420 AGUA 92423 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1098,emb|8254160| 3865 bp 2 contigs ----isReversed: 1 ----hitSequence: UUCAUAAUAUAAUCUUUUAAGGUUAAAGAUUUAAAAUUUAUUUUGGGGUGGUAAUUAUGAA ----ssRNAplot: (((((....((((((((((((((.....(((...))).))))))))))))))....))))) ----hitGC: 0.196721 ----pairStats: 22,0,4,7 hit 109 : 1086 1026 (rev) 14.25 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___>>>->>>>>>>>>>>>>>----->> 1 gucucuuuuAUGAuGaccucagccuAAAccccucugggcggcugagguCuGAUgccugga 60 :UC::+ U AU AU: :: :A+ UAAA+:::U +:::+ +U: :: :UG U+ +U :: 2780 UUCAUAAU-AUAAUCUUUUAAGGUUAAAGAUUUAAAAUUUAUUUUGGGGUGGUAAUU-AU 2837 >>> 61 gac 63 GA: 2838 GAA 2840 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1189,emb|8254336| 19624 bp 1 contigs ----isReversed: 0 ----hitSequence: AAUUUUUUAAGAUGAAAAUAAUUUUUUAAAUUUUAUCAACAAAAGAUAUAUUUGAUACUUCAUAGU ----ssRNAplot: (((((.......((((((((((((((.....(((....))).)))))))))))))).....))))) ----hitGC: 0.136364 ----pairStats: 22,0,1,8 hit 110 : 6266 6331 (fwd) 14.36 bits <<<<<---..--<<<<<<<<<<<<<<-----<<<___.>>>->>>>>>>>>>>>>>---- 1 gucucuuu..uAUGAuGaccucagccuAAAccccucu.gggcggcugagguCuGAUgccu 57 ::: :UUU AUGA::A:: ::::UAAA+: : ++ : : :::: ::U::GAU CU 6266 AAUUUUUUaaGAUGAAAAUAAUUUUUUAAAUUUUAUCaACAAAAGAUAUAUUUGAU-ACU 6324 -.>>>>> 58 g.gagac 63 + : ::: 6325 UcAUAGU 6331 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1233,emb|8255156| 1088 bp 1 contigs ----isReversed: 1 ----hitSequence: UUGUUUUUUAAUGAAGAAAUCUAAAUAAAUUUUUAAUAAAACAUUGAAUUUUUAGAGUUAAGAA ----ssRNAplot: (((((......((((((((((((((.....(((....))).))))))))))))))....))))) ----hitGC: 0.140625 ----pairStats: 22,0,2,6 hit 111 : 987 924 (rev) 14.19 bits <<<<<---.--<<<<<<<<<<<<<<-----<<<___.>>>->>>>>>>>>>>>>>----- 1 gucucuuu.uAUGAuGaccucagccuAAAccccucu.gggcggcugagguCuGAUgccug 58 :U+U:UUU A+G ::A: UC+: :UAAA+:::U + ::: : :+GA :U:: A++++U 102 UUGUUUUUuAAUGAAGAAAUCUAAAUAAAUUUUUAAuAAAACAUUGAAUUUUUAGAGUU- 160 >>>>> 59 gagac 63 :A+A: 161 AAGAA 165 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1276,emb|8254365| 330390 bp 2 contigs ----isReversed: 0 ----hitSequence: UUAUUAUGAAAUAAAAAUCUUGAUUUAAAAUUAAAAUGUUAAAGAUUAGUUUUUGCAAAA ----ssRNAplot: (((((......((((((((((((((....(((..)))))))))))))))))....))))) ----hitGC: 0.133333 ----pairStats: 22,0,1,7 hit 112 : 172161 172220 (fwd) 14.84 bits <<<<<---.--<<<<<<<<<<<<<<-----<<<___>>>->>>>>>>>>>>>>>-----> 1 gucucuuu.uAUGAuGaccucagccuAAAccccucugggcggcugagguCuGAUgccugg 59 :U:U +U AU A::A:CU: : :UAAA ::: ::: : : :AG:U::G U +UG 172161 UUAUUAUGaAAUAAAAAUCUUGAUUUAAA-AUUAA-AAU-GUUAAAGAUUAGUU-UUUGC 172216 >>>> 60 agac 63 A:A: 172217 AAAA 172220 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1281,emb|8254368| 57609 bp 3 contigs ----isReversed: 0 ----hitSequence: UUUUUUUCAUGCAAGCUUUAUUUUAAUUUAAUAAUAACUAAAAUUAAAUAUUGACAAAAA ----ssRNAplot: (((((....((((((((((((((...(((...)))))))))))))))))......))))) ----hitGC: 0.133333 ----pairStats: 22,0,1,7 hit 113 : 19894 19953 (fwd) 14.64 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___>>>->>>>>>>>>>>>>>-----.. 1 gucucuuuuAUGAuGaccucagccuAAAccccucugggcggcugagguCuGAUgccug.. 58 :U:U:UU+ AUG::::::U:A ::UAA :: U:: :: U:A::::::AU +UG 19894 UUUUUUUC-AUGCAAGCUUUAUUUUAA--UUUAAUAAU-AACUAAAAUUAAAU-AUUGac 19948 >>>>> 59 gagac 63 :A:A: 19949 AAAAA 19953 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1301,emb|8254370| 255838 bp 1 contigs ----isReversed: 1 ----hitSequence: UUUGUUUUAAUGAAAAAAAGUAUUGAUAAAAUUCUAAAUAUACAUUUUUGAUUUUAAUAAA ----ssRNAplot: (((((.....(((((((((((((.......(((...))))))))))))))))....))))) ----hitGC: 0.114754 ----pairStats: 22,1,1,4 hit 114 : 233382 233322 (rev) 18.19 bits <<<<<-----<<<<<<<<<<<<<.<.-----<<<___>>>->>>>>>>>>>>>>>----- 1 gucucuuuuAUGAuGaccucagc.c.uAAAccccucugggcggcugagguCuGAUgccug 58 :U:::UUU AUGA::A:: :::: UAAA :::+++::: :::: ::U::GAU +U 22457 UUUGUUUUAAUGAAAAAAAGUAUuGaUAAA-AUUCUAAAU--AUACAUUUUUGAU-UUUA 22512 >>>>> 59 gagac 63 :::A: 22513 AUAAA 22517 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1305,emb|8254371| 530472 bp 4 contigs ----isReversed: 0 ----hitSequence: UUAUUCUCUAUGAAGGAAGAUCUCUAAACUGAGAAGUGAGGUUUUCUGGAAAUGAUUUAAGAA ----ssRNAplot: (((((.....((((((((((((((....(((..))).)))))))))))))).......))))) ----hitGC: 0.31746 ----pairStats: 22,0,3,5 hit 115 : 225026 225088 (fwd) 16.03 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___>>>-.>>>>>>>>>>>>>>..---- 1 gucucuuuuAUGAuGaccucagccuAAAccccucugggc.ggcugagguCuGAU..gccu 57 :U U: U+UA+GA :::: :+::CUAAA C: :G G::+: :::: GA+ G +U 225026 UUAUUCUCUAUGAAGGAAGAUCUCUAAA-CUGAG-AAG-uGAGGUUUUCUGGAAauGAUU 225082 ->>>>> 58 ggagac 63 +:A A: 225083 UAAGAA 225088 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1305,emb|8254371| 530472 bp 4 contigs ----isReversed: 0 ----hitSequence: UAUUAUUUUUUUAUAAAUUCAAUUUAAAUACUUUUACUUUGGAUUGUAUUUAGAUUUAUUAAUA ----ssRNAplot: (((((.....((((((((((((((.....(((....)))..))))))))))))))....))))) ----hitGC: 0.109375 ----pairStats: 22,0,1,5 hit 116 : 270713 270776 (fwd) 15.55 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___.>>>-.>>>>>>>>>>>>>>----- 1 gucucuuuuAUGAuGaccucagccuAAAccccucu.gggc.ggcugagguCuGAUgccug 58 :::U:UUUU U:A :A:: CA:::UAAA+:::U+U :::+ :::UG ::U: G:U + + 270713 UAUUAUUUUUUUAUAAAUUCAAUUUAAAUACUUUUaCUUUgGAUUGUAUUUAGAU-UUAU 270771 >>>>> 59 gagac 63 :A::: 270772 UAAUA 270776 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1305,emb|8254371| 530472 bp 4 contigs ----isReversed: 0 ----hitSequence: UUCUUUUUCAUGAAGGUGAUAAUGUAAACAAUCUAUAUUUUGUUAUGAGAGGAUCAUUUGUAGAA ----ssRNAplot: (((((.....((((((((((((((.....(((....))).))))))))))))))......))))) ----hitGC: 0.261538 ----pairStats: 22,0,2,8 hit 117 : 348237 348301 (fwd) 20.38 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___.>>>->>>>>>>>>>>>>>.----- 1 gucucuuuuAUGAuGaccucagccuAAAccccucu.gggcggcugagguCuGAU.gccug 58 :UCU UUU+AUGA : ::A:: UAAAC:::+++ :::+ ::U:: : GAU + +UG 348237 UUCUUUUUCAUGAAGGUGAUAAUGUAAACAAUCUAuAUUUUGUUAUGAGAGGAUcAUUUG 348296 >>>>> 59 gagac 63 AGA: 348297 UAGAA 348301 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1311,emb|8254373| 875719 bp 4 contigs ----isReversed: 0 ----hitSequence: AUCUCCUAUUAAGAAGAGAUUAUCUUAAACUCUAUCUUUGUAUAGCUAAUUUACUGACCUAUGAGUU ----ssRNAplot: (((((......((((((((((((((.....(((....)))...))))))))).)))))....))))) ----hitGC: 0.283582 ----pairStats: 22,0,2,7 hit 118 : 132767 132833 (fwd) 14.26 bits <<<<<---.--<<<<<<<<<<<<<<-----<<<___.>>>-..>>>>>>>>>.>>>>>-- 1 gucucuuu.uAUGAuGaccucagccuAAAccccucu.gggc..ggcugaggu.CuGAUgc 55 :+CUC U UA:GA:GA::U:A C:UAAAC:: ++ ::+ :G U:A::U C:GA: C 132767 AUCUCCUAuUAAGAAGAGAUUAUCUUAAACUCUAUCuUUGUauAGCUAAUUUaCUGAC-C 132825 --->>>>> 56 cuggagac 63 + +GAG+: 132826 UAUGAGUU 132833 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1311,emb|8254373| 875719 bp 4 contigs ----isReversed: 1 ----hitSequence: UUGAUCUUGUGAUUGUUUUUACUUAAAUUAAUUUACUUUUAUAAAAAGAGGAUAUCAUUCUAUCAA ----ssRNAplot: (((((....((((((((((((((......(((...))).))))))))))))))........))))) ----hitGC: 0.19697 ----pairStats: 22,0,1,7 hit 119 : 187728 187663 (rev) 14.83 bits <<<<<-----<<<<<<<<<<<<<<----.-<<<___>>>->>>>>>>>>>>>>>-----. 1 gucucuuuuAUGAuGaccucagccuAAA.ccccucugggcggcugagguCuGAUgccug. 58 :U::: UU UGA+ ::U:::: UAAA +:::U++:::+ ::::A:: +GAU+ C + 687992 UUGAUCUU-GUGAUUGUUUUUACUUAAAuUAAUUUACUUUUAUAAAAAGAGGAUAUCAUu 688050 ..>>>>> 59 ..gagac 63 :::A: 688051 cuAUCAA 688057 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1316,emb|8254375| 46133 bp 2 contigs ----isReversed: 0 ----hitSequence: UCUAUUUUAUGAUAUUUUUUUCUUCAAUAUUUAAAAAGUUGGAAAAAAAUUGGUUCAAUAGG ----ssRNAplot: (((((....((((((((((((((.....(((....)))..))))))))))))))...))))) ----hitGC: 0.193548 ----pairStats: 22,0,2,5 hit 120 : 20245 20306 (fwd) 14.31 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___.>>>-.>>>>>>>>>>>>>>----- 1 gucucuuuuAUGAuGaccucagccuAAAccccucu.gggc.ggcugagguCuGAUgccug 58 ::::UUU AU AU::::U:::C:U AA+ ::U + :: + :G:::A::::UG U C 20245 UCUAUUUU-AUGAUAUUUUUUUCUUCAAUAUUUAAaAAGUuGGAAAAAAAUUGGU-UCA- 20301 >>>>> 59 gagac 63 :::: 20302 AUAGG 20306 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1320,emb|8254377| 298147 bp 1 contigs ----isReversed: 0 ----hitSequence: GUUUAUGGAUGACAAUUUAUUUUAAUAAUUUUUAAUAGAAAAAUUUUGAUGAAUUAAAAU ----ssRNAplot: (((((....((((((((((((((....(((...))))))))))))))))).....))))) ----hitGC: 0.133333 ----pairStats: 22,0,2,7 hit 121 : 147364 147423 (fwd) 15.04 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___>>>->>>>>>>>>>>>>>----->> 1 gucucuuuuAUGAuGaccucagccuAAAccccucugggcggcugagguCuGAUgccugga 60 :U:U U AUGA::A :U :::: A A :::U+U::: :::: A: U::GAUG U+ A 147364 GUUUAUGG-AUGACAAUUUAUUUUAAUA-AUUUUUAAU-AGAAAAAUUUUGAUGAAUUAA 147420 >>> 61 gac 63 :A: 147421 AAU 147423 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1321,emb|8254378| 385159 bp 2 contigs ----isReversed: 0 ----hitSequence: UUUAAAUAAUGGAGUAAAAUAAUUAAAAAUUAAAUUGUUAAUAUACUUACUUUGUUAAA ----ssRNAplot: (((((....((((((((((((((....(((...)))))))))))))))))....))))) ----hitGC: 0.118644 ----pairStats: 22,0,2,4 hit 122 : 312482 312540 (fwd) 14.17 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___>>>->>>>>>>>>>>>>>----->> 1 gucucuuuuAUGAuGaccucagccuAAAccccucugggcggcugagguCuGAUgccugga 60 :U:::+U A G :G:: : ::::UAAA :::U +::: :::: : ::C: A +UG:: 312482 UUUAAAUA-AUGGAGUAAAAUAAUUAAA-AAUUAAAUU-GUUAAUAUACUUAC-UUUGUU 312537 >>> 61 gac 63 :A: 312538 AAA 312540 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1322,emb|8254379| 757155 bp 3 contigs ----isReversed: 1 ----hitSequence: AAUAGAAUAUGAAGAUAAAAAUAUUAAAAUUUUAUCUAAAUAUACUUUAAUCAGAUCUAUCUAUA ----ssRNAplot: (((((....((((((((((((((......(((.....)))..))))))))))))))....))))) ----hitGC: 0.138462 ----pairStats: 22,0,0,7 hit 123 : 515755 515691 (rev) 14.12 bits <<<<<-----<<<<<<<<<<<<<<.-----<<<___..>>>.->>>>>>>>>>>>>>--- 1 gucucuuuuAUGAuGaccucagcc.uAAAccccucu..ggg.cggcugagguCuGAUgcc 56 ::::+ U AUGA:GA: ::A :: UAAA :::U U ::: :: U:: :UC:GAU C+ 241401 AAUAGAAU-AUGAAGAUAAAAAUAuUAAAAUUUUAUcuAAAuAUACUUUAAUCAGAU-CU 241458 -->>>>> 57 uggagac 63 +:::: 241459 AUCUAUA 241465 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1345,emb|8254381| 55553 bp 2 contigs ----isReversed: 1 ----hitSequence: UUUUCUCUUAUUAAAUUAAUAAUUAAAAUUUACAUUCAAUAUUUUUACCUGAUCAGCCUGAAAA ----ssRNAplot: (((((.....((((((((((((((.....(((...))).))))))))))))))......))))) ----hitGC: 0.1875 ----pairStats: 22,0,0,7 hit 124 : 31074 31011 (rev) 14.76 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___>>>->>>>>>>>>>>>>>.-----> 1 gucucuuuuAUGAuGaccucagccuAAAccccucugggcggcugagguCuGAU.gccugg 59 :U:UCU UUAU:A:: ::: A:: AAA+: :+ U: : ::U ::: ::G:U ++C++G 24480 UUUUCUCUUAUUAAAUUAAUAAUUAAAAUUUACAUUCAAUAUUUUUACCUGAUcAGCCUG 24539 >>>> 60 agac 63 A:A: 24540 AAAA 24543 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1352,emb|8254529| 123311 bp 1 contigs ----isReversed: 0 ----hitSequence: UUUUCUUUAAAGUAAAUAACUAAUUAACUAAUAAAUAAUUUAUUUUUUCUUAAAUAUUUGAAAA ----ssRNAplot: (((((.....((((((((((((((.....(((.....))).))))))))))))))....))))) ----hitGC: 0.09375 ----pairStats: 22,0,0,5 hit 125 : 92801 92864 (fwd) 14.10 bits <<<<<-----<<<<<<<<<<<<<<----.-<<<___..>>>->>>>>>>>>>>>>>---- 1 gucucuuuuAUGAuGaccucagccuAAA.ccccucu..gggcggcugagguCuGAUgccu 57 :U:UCUUU A:G:::A :: +:::UAA +::: + :::+:::+ :: U:::A: +U 92801 UUUUCUUUAAAGUAAAUAACUAAUUAA-cUAAUAAAuaAUUUAUUUUUUCUUAAAU-AUU 92858 ->>>>> 58 ggagac 63 +GA:A: 92859 UGAAAA 92864 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1356,emb|8254385| 477791 bp 2 contigs ----isReversed: 0 ----hitSequence: UUAAUAAUUAUGUAAAUAAAUAUGAAAAUAUUUACCAUUAAAGAUCUUUAUUUUAAUUCUGAUUAA ----ssRNAplot: (((((.....((((((((((((((.....(((...)))....)))))))))))))).....))))) ----hitGC: 0.121212 ----pairStats: 22,0,0,5 hit 126 : 48239 48304 (fwd) 15.00 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___>>>-...>>>>>>>>>>>>>>---- 1 gucucuuuuAUGAuGaccucagccuAAAccccucugggc...ggcugagguCuGAUgccu 57 :U ::+ UUA+G:::A::::+::+ AAA+:::U +:::+ +::+::::U:::A+ CU 48239 UUAAUAAUUAUGUAAAUAAAUAUGAAAAUAUUUACCAUUaaaGAUCUUUAUUUUAAUUCU 48298 ->>>>> 58 ggagac 63 G:: A: 48299 GAUUAA 48304 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1356,emb|8254385| 477791 bp 2 contigs ----isReversed: 0 ----hitSequence: UAUUUAUUGAUAAUGAAUCUUGAUUAAAAAAUUAUUUUUUUAAUCUUUUGAAGUUUUAAAGA ----ssRNAplot: (((((.....((((((((((((((....(((....))))))))))))))))).....))))) ----hitGC: 0.129032 ----pairStats: 22,0,2,7 hit 127 : 453945 454006 (fwd) 13.95 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___.>>>->>>>>>>>>>>>>>-----> 1 gucucuuuuAUGAuGaccucagccuAAAccccucu.gggcggcugagguCuGAUgccugg 59 :::U:+UU A+ AU:A: ::+: UAAA :::U++ ::: :+:: :U:UG +G +U+: 453945 UAUUUAUUGAUAAUGAAUCUUGAUUAAA-AAAUUAuUUU-UUUAAUCUUUUGAAGUUUUA 454002 >>>> 60 agac 63 A::: 454003 AAGA 454006 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1356,emb|8254385| 477791 bp 2 contigs ----isReversed: 1 ----hitSequence: UUUUUUUUAUACAAAGUAAAUUUAAAUAUUUUUCUAAUUAAUAUAAUUUAGAUUACCUAAAAA ----ssRNAplot: (((((....(((((((((((((.....(((.....))).)))))))))))).).....))))) ----hitGC: 0.0952381 ----pairStats: 22,1,0,5 hit 128 : 361963 361901 (rev) 13.97 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___..>>>->>>>>>>>>>>>>>.---- 1 gucucuuuuAUGAuGaccucagccuAAAccccucu..gggcggcugagguCuGAU.gccu 57 :U:U:UUU AU A::A: U: :::UAAA+:::U+U :::+::: :A :U::GAU +CCU 115829 UUUUUUUU-AU-ACAAAGUAAAUUUAAAUAUUUUUcuAAUUAAUAUAAUUUAGAUuACCU 115886 ->>>>> 58 ggagac 63 :A:A: 115887 -AAAAA 115891 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1396,emb|8254395| 541259 bp 4 contigs ----isReversed: 1 ----hitSequence: GACUCUCUAUUAGGAAUAAAGCUUAAAAAAUAGUUUAGCUUUUAUCAGAUGAUGGAGAU ----ssRNAplot: (((((....((((((((((((((....(((...)))))))))))))))))....))))) ----hitGC: 0.288136 ----pairStats: 22,0,1,6 hit 129 : 440997 440939 (rev) 14.06 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___.>>>->>>>>>>>>>>>>>-----> 1 gucucuuuuAUGAuGaccucagccuAAAccccucu.gggcggcugagguCuGAUgccugg 59 : CUCU U AU:A GA ::AGC:UAAA :::U ::: :GCU:: UC G:U + UGG 100263 GACUCUCU-AUUAGGAAUAAAGCUUAAA-AAAUA-gUUU-AGCUUUUAUCAGAU-GAUGG 100317 >>>> 60 agac 63 AG : 100318 AGAU 100321 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1396,emb|8254395| 541259 bp 4 contigs ----isReversed: 1 ----hitSequence: GAAUUUUUAUAAUGAUAAAACAUAAAAUGAUUUUAUAUCAUUAUUUUAUCUAUGCUUAAAAUC ----ssRNAplot: (((((....((((((((((((((.....(((.....))).))))))))))))))....))))) ----hitGC: 0.142857 ----pairStats: 22,0,1,5 hit 130 : 399004 398942 (rev) 14.90 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___..>>>->>>>>>>>>>>>>>----- 1 gucucuuuuAUGAuGaccucagccuAAAccccucu..gggcggcugagguCuGAUgccug 58 G::U:UUU A+ UGA::::A : AAA+:::U+U ::: : U::::UCU + C+U 142256 GAAUUUUU-AUAAUGAUAAAACAUAAAAUGAUUUUauAUCAUUAUUUUAUCUAUG-CUUA 142313 >>>>> 59 gagac 63 :A::C 142314 AAAUC 142318 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1396,emb|8254395| 541259 bp 4 contigs ----isReversed: 1 ----hitSequence: UUUUUAUUAAUUAGAAUUAUUGAUUUAAAAAUAUUUAUUAGCAACUAUUUGUUGAAGAAUAA ----ssRNAplot: (((((.....((((((((((((((.....(((....)))))))))))))))))....))))) ----hitGC: 0.129032 ----pairStats: 22,0,1,7 hit 131 : 259544 259483 (rev) 15.03 bits <<<<<-----<<<<<<<<<<<<<<.-----<<<___.>>>->>>>>>>>>>>>>>----- 1 gucucuuuuAUGAuGaccucagcc.uAAAccccucu.gggcggcugagguCuGAUgccug 58 :U:U:+UU AU:A::A: ::G:: UAAA ::: +U ::: ::C:: :U::G:U + G 281716 UUUUUAUUAAUUAGAAUUAUUGAUuUAAA-AAUAUUuAUU-AGCAACUAUUUGUU-GAAG 281772 >>>>> 59 gagac 63 :A:A: 281773 AAUAA 281777 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1400,emb|8254397| 230559 bp 1 contigs ----isReversed: 1 ----hitSequence: UUUUGGAAAAUGAUAGCAGGUACAUAAAAGAAUAAUCUCCAGGUAAUUUUUUUAUUCUUCAAAA ----ssRNAplot: (((((.....((((((((((((((.....(((....)))..))))))))))))))....))))) ----hitGC: 0.25 ----pairStats: 22,0,2,7 hit 132 : 189455 189392 (rev) 14.68 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___.>>>-.>>>>>>>>>>>>>>----- 1 gucucuuuuAUGAuGaccucagccuAAAccccucu.gggc.ggcugagguCuGAUgccug 58 :U:U: AUG U:: : ::C:UAAA :: U + ::C :G:: : ::U AU CU+ 41105 UUUUGGAAAAUGAUAGCAGGUACAUAAAAGAAUAAuCUCCaGGUAAUUUUUUUAU-UCUU 41163 >>>>> 59 gagac 63 :A:A: 41164 CAAAA 41168 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1400,emb|8254397| 230559 bp 1 contigs ----isReversed: 1 ----hitSequence: AAUAUGGAAAAUGACGAAUUUAGUCUAAACUGUAAAACAGGGAUUAAAUUCUGAAAAAUAUAUG ----ssRNAplot: (((((......((((((((((((((....(((.....))).))))))))))))))....))))) ----hitGC: 0.25 ----pairStats: 22,0,1,4 hit 133 : 27980 27917 (rev) 19.68 bits <<<<<---.--<<<<<<<<<<<<<<-----<<<___..>>>-.>>>>>>>>>>>>>>--- 1 gucucuuu.uAUGAuGaccucagccuAAAccccucu..gggc.ggcugagguCuGAUgcc 56 :::: A+GA:GA::U:A+:CUAAA C::U + ::G G:+U:A::UC:GA+ 202580 AAUAUGGAaAAUGACGAAUUUAGUCUAAA-CUGUAAaaCAG-gGAUUAAAUUCUGAA-AA 202636 -->>>>> 57 uggagac 63 +:::: 202637 AUAUAUG 202643 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1421,emb|8254548| 714158 bp 3 contigs ----isReversed: 1 ----hitSequence: AUUUUAUUUAUAAUUUUAAUUAUUUAAAAUUUUUAUUUUAUAAUUAAUUGUUUGUUGUUAAU ----ssRNAplot: (((((.....((((((((((((((....(((...))).)))))))))))))).....))))) ----hitGC: 0.0483871 ----pairStats: 22,0,0,8 hit 134 : 259190 259129 (rev) 15.00 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___>>>-.>>>>>>>>>>>>>>-----> 1 gucucuuuuAUGAuGaccucagccuAAAccccucugggc.ggcugagguCuGAUgccugg 59 :U: +UUUAU AU :::::::: UAAA : :U+U: : :::::::: UG U ++UG 454969 AUUUUAUUUAUAAUUUUAAUUAUUUAAA-AUUUUUAUU-uUAUAAUUAAUUGUUUGUUGU 455026 >>>> 60 agac 63 :A: 455027 UAAU 455030 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1422,emb|8254549| 250927 bp 4 contigs ----isReversed: 1 ----hitSequence: UUUUGUUUUAUGAGCAUAAAUACCUGAAAGAUUGUCGCUAUUAUAAGUAUAUGAUGUUUCAUUA ----ssRNAplot: (((((.....((((((((((((((......(((...)))..))))))))))))))....))))) ----hitGC: 0.25 ----pairStats: 22,0,2,11 hit 135 : 103632 103569 (rev) 13.96 bits <<<<<-----<<<<<<<<<<<<<<.-----<<<___>>>.->>>>>>>>>>>>>>----- 1 gucucuuuuAUGAuGaccucagcc.uAAAccccucuggg.cggcugagguCuGAUgccug 58 :+:U:UUUUAUGA: A:: ::: +AAA+: ++ : + ::: ::U :GAU ++U+ 147296 UUUUGUUUUAUGAGCAUAAAUACCuGAAAGAUUGUCGCUaUUAUAAGUAUAUGAU-GUUU 147354 >>>>> 59 gagac 63 :A:+: 147355 CAUUA 147359 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1428,emb|8254551| 718613 bp 7 contigs ----isReversed: 0 ----hitSequence: UUUUCAAAGAUGAAAAAAAAUUUGCAAAAAAUUUAAAAAUUUUAAUUUUAUUAGAUGUAAAAA ----ssRNAplot: (((((.....((((((((((((((.....(((......))).))))))))))))))..))))) ----hitGC: 0.111111 ----pairStats: 22,0,1,7 hit 136 : 612322 612384 (fwd) 14.39 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___...>>>->>>>>>>>>>>>>>---- 1 gucucuuuuAUGAuGaccucagccuAAAccccucu...gggcggcugagguCuGAUgccu 57 :U:U + AUGA::A :::+:: AAA :::U++ :::+ ::+::: U::GAU ++ 612322 UUUUCAAAGAUGAAAAAAAAUUUGCAAAAAAUUUAaaaAUUUUAAUUUUAUUAGAU-GU- 612379 ->>>>> 58 ggagac 63 A:A: 612380 -AAAAA 612384 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1428,emb|8254551| 718613 bp 7 contigs ----isReversed: 1 ----hitSequence: UUCUUAUUAAAGAUUAUAUUUAUUUAAAUUUUUUUCAAUUAAUAAUUAUUAGAAUUCUUAAGAA ----ssRNAplot: (((((.....((((((((((((((.....(((....))).)))))))))))))).....))))) ----hitGC: 0.09375 ----pairStats: 22,0,0,6 hit 137 : 36982 36919 (rev) 23.72 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___.>>>->>>>>>>>>>>>>>-----> 1 gucucuuuuAUGAuGaccucagccuAAAccccucu.gggcggcugagguCuGAUgccugg 59 :UCU:+UU A:GA A:: :::::UAAA+ ::U+U :: +::::: ::U GA: CU+: 681632 UUCUUAUUAAAGAUUAUAUUUAUUUAAAUUUUUUUcAAUUAAUAAUUAUUAGAAUUCUUA 681691 >>>> 60 agac 63 AGA: 681692 AGAA 681695 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1436,emb|8254555| 596115 bp 4 contigs ----isReversed: 0 ----hitSequence: UCUUGAAUAUGAAGAGAGCUUUAUAAAAUCUUGUAAAAAUAAAAGCUCUCAGAGAUAAAAAUA ----ssRNAplot: (((((....((((((((((((((.....(((.....))).))))))))))))))....))))) ----hitGC: 0.238095 ----pairStats: 22,0,1,7 hit 138 : 395012 395074 (fwd) 14.98 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___..>>>->>>>>>>>>>>>>>----- 1 gucucuuuuAUGAuGaccucagccuAAAccccucu..gggcggcugagguCuGAUgccug 58 :::U + U A+GA:GA ::C::: UAAA :::U U :::+ :::G:: UC:GA+ + 395012 UCUUGAAU-AUGAAGAGAGCUUUAUAAAAUCUUGUaaAAAUAAAAGCUCUCAGAG-AUAA 395069 >>>>> 59 gagac 63 A::: 395070 AAAUA 395074 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1436,emb|8254555| 596115 bp 4 contigs ----isReversed: 1 ----hitSequence: CUUAUAUCAAUUAAGAUAUAUCUUUAAAUUUAACAAUUAAAAUAGGUAUAUCAGUUUCAGAUAAG ----ssRNAplot: (((((.....((((((((((((((.....(((.....)))..))))))))))))))....))))) ----hitGC: 0.184615 ----pairStats: 22,0,1,5 hit 139 : 539834 539770 (rev) 23.49 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___..>>>-.>>>>>>>>>>>>>>---- 1 gucucuuuuAUGAuGaccucagccuAAAccccucu..gggc.ggcugagguCuGAUgccu 57 :U:::+U+ AU:A:GA::U:+:: UAAA+::: C+ ::: ::+:A::UC:G:U C 56282 CUUAUAUCAAUUAAGAUAUAUCUUUAAAUUUAACAauUAAAaUAGGUAUAUCAGUU-UCA 56340 ->>>>> 58 ggagac 63 G:::A: 56341 GAUAAG 56346 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1462,emb|8254705| 87984 bp 3 contigs ----isReversed: 0 ----hitSequence: GAUUUUUUAUGAAAAGCAUUAUUUAAAGGAAAUUAAAGAGGAUUUUUUGAUAAUCAUAUC ----ssRNAplot: (((((....((((((((((((((.....(((..))).))))))))))))))....))))) ----hitGC: 0.2 ----pairStats: 22,0,3,8 hit 140 : 46720 46779 (fwd) 16.42 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___>>>->>>>>>>>>>>>>>----->> 1 gucucuuuuAUGAuGaccucagccuAAAccccucugggcggcugagguCuGAUgccugga 60 G:: :UUU AUGA::A::::+ ::UAAA+ : + : :: +::::U::GAU+ ++ : 46720 GAUUUUUU-AUGAAAAGCAUUAUUUAAAGGAAAU-UAAAGAGGAUUUUUUGAUAAUC-AU 46776 >>> 61 gac 63 ::C 46777 AUC 46779 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1465,emb|8253904| 274829 bp 2 contigs ----isReversed: 1 ----hitSequence: AAUUUUUCAUGAUAAAAAUAUGCAAAAUUAUUCAUAUUUAGAUUUUUUUAAUCAUAAAUU ----ssRNAplot: (((((....((((((((((((((.....(((..))).))))))))))))))....))))) ----hitGC: 0.116667 ----pairStats: 22,0,1,4 hit 141 : 18655 18596 (rev) 14.28 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___>>>->>>>>>>>>>>>>>----->> 1 gucucuuuuAUGAuGaccucagccuAAAccccucugggcggcugagguCuGAUgccugga 60 :::U:UU+ A+G U:A:::: : AAA+:::UC :::+ : ::::U:U A+ C +:A 256175 AAUUUUUC-AUGAUAAAAAUAUGCAAAAUUAUUC-AUAUUUAGAUUUUUUUAA-UCAUAA 256231 >>> 61 gac 63 ::: 256232 AUU 256234 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1472,emb|8254707| 196396 bp 1 contigs ----isReversed: 0 ----hitSequence: UUUUUAUUUAUUUAAUUAAUUUCUAAAAUUUAAUAAUUAAAUUGAUUUAAUUUUUAAAAA ----ssRNAplot: (((((.....(((((((((((((....(((....))))))))))))))).)....))))) ----hitGC: 0.0333333 ----pairStats: 22,1,1,3 hit 142 : 53730 53789 (fwd) 14.39 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___.>>>->>>>>>>>>>>>>>-----> 1 gucucuuuuAUGAuGaccucagccuAAAccccucu.gggcggcugagguCuGAUgccugg 59 :U:U:+UUUAU :U:A::::::: UAAA :::U + ::: :::::::U:U:AU +U+: 53730 UUUUUAUUUAU-UUAAUUAAUUUCUAAA-AUUUAAuAAU-UAAAUUGAUUUAAU-UUUUA 53785 >>>> 60 agac 63 A:A: 53786 AAAA 53789 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1483,emb|8254564| 889818 bp 4 contigs ----isReversed: 0 ----hitSequence: UUGAUUUCUAUGUAAAAAUUUAUUUAAAUCCUCCAUAGACUAAAAAUCUAAUAAACUUAUUAA ----ssRNAplot: (((((.....((((((((((((((.....(((....))).))))))))))))))....))))) ----hitGC: 0.174603 ----pairStats: 22,0,1,8 hit 143 : 304328 304390 (fwd) 15.37 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___.>>>->>>>>>>>>>>>>>-----> 1 gucucuuuuAUGAuGaccucagccuAAAccccucu.gggcggcugagguCuGAUgccugg 59 :U ::UU+UA+G:::A::U:: : UAAA+ C:+C+ :G C : ::A::U:::A+ CU+: 304328 UUGAUUUCUAUGUAAAAAUUUAUUUAAAUCCUCCAuAGACUAAAAAUCUAAUAA-ACUUA 304386 >>>> 60 agac 63 : A: 304387 UUAA 304390 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1483,emb|8254564| 889818 bp 4 contigs ----isReversed: 0 ----hitSequence: UUUUGAUGAAUGUUAAUAAUUUAUUAAAUAAGUUUAUUUAAUAUAAAGUCUUUAAAGUUGCACAUAG ----ssRNAplot: (((((.....((((((((((((((.....(((....)))...))))))))))))))......))))) ----hitGC: 0.164179 ----pairStats: 22,0,2,5 hit 144 : 616584 616650 (fwd) 13.94 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___.>>>-..>>>>>>>>>>>>>>---- 1 gucucuuuuAUGAuGaccucagccuAAAccccucu.gggc..ggcugagguCuGAUgccu 57 U:U:+U A+G:U:A : :::::UAAA+:: U+U :: ::::: : U:U:A+ ++U 616584 UUUUGAUGAAUGUUAAUAAUUUAUUAAAUAAGUUUaUUUAauAUAAAGUCUUUAAA-GUU 616642 -..>>>>> 58 g..gagac 63 G :A:A 616643 GcaCAUAG 616650 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1501,emb|8254712| 240713 bp 5 contigs ----isReversed: 1 ----hitSequence: UACGUUUUAUAAUUAAAUAAAUUUAAAUUAUUUUUAAUCAUAUUAUUUUUGUUAAUAUAUGGA ----ssRNAplot: (((((....((((((((((((((......(((...))).)))))))))))))).....))))) ----hitGC: 0.0952381 ----pairStats: 22,0,1,7 hit 145 : 85332 85270 (rev) 16.50 bits <<<<<-----<<<<<<<<<<<<<<----.-<<<___>>>->>>>>>>>>>>>>>-----> 1 gucucuuuuAUGAuGaccucagccuAAA.ccccucugggcggcugagguCuGAUgccugg 59 ::C::UUU AU AU A::U:A :UAAA +:::U+U:::C: U:A::U UG U+ + +: 155382 UACGUUUU-AUAAUUAAAUAAAUUUAAAuUAUUUUUAAUCAUAUUAUUUUUGUUAAUAUA 155440 >>>> 60 agac 63 :G:: 155441 UGGA 155444 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1512,emb|8254715| 6069 bp 2 contigs ----isReversed: 0 ----hitSequence: UUCUCCAAAAAUGAUAAAAUAAUUUGAAACUUUUAUAAGUUCAAAUAUUUUUUUUUUUUGAGAA ----ssRNAplot: (((((......((((((((((((((.....(((...)))..))))))))))))))....))))) ----hitGC: 0.15625 ----pairStats: 22,0,2,4 hit 146 : 3041 3104 (fwd) 15.07 bits <<<<<---.--<<<<<<<<<<<<<<-----<<<___>>>-.>>>>>>>>>>>>>>----- 1 gucucuuu.uAUGAuGaccucagccuAAAccccucugggc.ggcugagguCuGAUgccug 58 :UCUC AU U:A::U: :: +AAAC:::U U:::+ :: :A::U:U U +U+ 3041 UUCUCCAAaAAUGAUAAAAUAAUUUGAAACUUUUAUAAGUuCAAAUAUUUUUUUU-UUUU 3099 >>>>> 59 gagac 63 GAGA: 3100 GAGAA 3104 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1516,emb|8254570| 180112 bp 6 contigs ----isReversed: 1 ----hitSequence: CUUAUUUUGAGAUAAUUUAAUUAUAAAUAAUUUUAUUUGGUUAUGUUAGAUGUUUUAUAAG ----ssRNAplot: (((((....((((((((((((((.....(((...))))))))))))))))).....))))) ----hitGC: 0.147541 ----pairStats: 22,0,3,3 hit 147 : 48357 48297 (rev) 16.02 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___>>>->>>>>>>>>>>>>>----->> 1 gucucuuuuAUGAuGaccucagccuAAAccccucugggcggcugagguCuGAUgccugga 60 :U:::UUU :GA :A: U:A:::UAAA+:::U+U::: :::U:A :U: GA:G +U+:: 131756 CUUAUUUU-GAGAUAAUUUAAUUAUAAAUAAUUUUAUU-UGGUUAUGUUAGAUGUUUUAU 131813 >>> 61 gac 63 :A: 131814 AAG 131816 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1516,emb|8254570| 180112 bp 6 contigs ----isReversed: 1 ----hitSequence: CUUAUUUUGAGAUAAUUUAAUUAUAAAUAAUUUUAUUUGGUUAUGUUAGAUGUUUUAUAAG ----ssRNAplot: (((((....((((((((((((((.....(((...))))))))))))))))).....))))) ----hitGC: 0.147541 ----pairStats: 22,0,3,3 hit 148 : 45369 45309 (rev) 16.02 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___>>>->>>>>>>>>>>>>>----->> 1 gucucuuuuAUGAuGaccucagccuAAAccccucugggcggcugagguCuGAUgccugga 60 :U:::UUU :GA :A: U:A:::UAAA+:::U+U::: :::U:A :U: GA:G +U+:: 134744 CUUAUUUU-GAGAUAAUUUAAUUAUAAAUAAUUUUAUU-UGGUUAUGUUAGAUGUUUUAU 134801 >>> 61 gac 63 :A: 134802 AAG 134804 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1517,emb|8254716| 1191929 bp 10 contigs ----isReversed: 0 ----hitSequence: UUGAAUUUUAUGAGGAGAUUUAUGAAAAUGUAUUUUAAAGAUAAUUUUAUGAGAACUUCUUGGA ----ssRNAplot: (((((.....((((((((((((((.....(((...))).))))))))))))))......))))) ----hitGC: 0.21875 ----pairStats: 22,0,4,7 hit 149 : 4171 4234 (fwd) 15.60 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___>>>->>>>>>>>>>>>>>-----.> 1 gucucuuuuAUGAuGaccucagccuAAAccccucugggcggcugagguCuGAUgccug.g 59 :++::UUUUA+GA: A:: ::::+ AAA+ ::U+U:: +:::: ::U :GA++ CU+ : 4171 UUGAAUUUUAUGAGGAGAUUUAUGAAAAUGUAUUUUAAAGAUAAUUUUAUGAGAACUUcU 4230 >>>> 60 agac 63 :++: 4231 UGGA 4234 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1517,emb|8254716| 1191929 bp 10 contigs ----isReversed: 0 ----hitSequence: GUUUGAAUAUGAAAUUAAUUUAUUAAAUUAAUAAUUAUCAGGAAUUAACUCAUUCAUUCAUAU ----ssRNAplot: (((((....((((((((((((((.....(((...)))..)))))))))))))).....))))) ----hitGC: 0.15873 ----pairStats: 22,0,2,6 hit 150 : 181780 181842 (fwd) 16.59 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___>>>-.>>>>>>>>>>>>>>-----> 1 gucucuuuuAUGAuGaccucagccuAAAccccucugggc.ggcugagguCuGAUgccugg 59 :U:U:+ U AUG :::::::::::UAAA+:::U +:::+ ::::::::::: AU C U+: 181780 GUUUGAAU-AUGAAAUUAAUUUAUUAAAUUAAUAAUUAUcAGGAAUUAACUCAUUCAUUC 181838 >>>> 60 agac 63 A:A: 181839 AUAU 181842 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1517,emb|8254716| 1191929 bp 10 contigs ----isReversed: 0 ----hitSequence: UUUUAAGUAAUGAAGAUAUGUUUAUAAAAAAUUCUUAUUUUUAAUGAAAGAAUAUCUUUGAUAUUUCAUAAAA ----ssRNAplot: (((((.....((((((((((((((.....(((....))).........))))))))))))))......))))) ----hitGC: 0.136986 ----pairStats: 22,0,3,5 hit 151 : 205677 205749 (fwd) 14.82 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___.>>>-........>>>>>>>>>>>> 1 gucucuuuuAUGAuGaccucagccuAAAccccucu.gggc........ggcugagguCuG 51 :U:U:+ U AUGA::A :U ::: UAAA :::UCU :::+ ::: A: U::G 205677 UUUUAAGUAAUGAAGAUAUGUUUAUAAAAAAUUCUuAUUUuuaaugaaAGAAUAUCUUUG 205736 >>-----..>>>>> 52 AUgccug..gagac 63 AU +U+ :A:A: 205737 AU-AUUUcaUAAAA 205749 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1517,emb|8254716| 1191929 bp 10 contigs ----isReversed: 0 ----hitSequence: UAUUUUUUAAUAUGAAAAUAAAGAUAAAAAGGUUAUCAACUAAUUUAUAUUUGAUUUGCUUAAAAGA ----ssRNAplot: (((((.......((((((((((((((.....(((...))).)))))))))))))).......))))) ----hitGC: 0.149254 ----pairStats: 22,0,1,6 hit 152 : 938705 938771 (fwd) 21.02 bits <<<<<---..--<<<<<<<<<<<<<<-----<<<___>>>->>>>>>>>>>>>>>.---- 1 gucucuuu..uAUGAuGaccucagccuAAAccccucugggcggcugagguCuGAU.gccu 57 :::U:UUU UAUGA::A:: : :: AAA+::: ++:::+ :: : ::U::GAU +CU 938705 UAUUUUUUaaUAUGAAAAUAAAGAUAAAAAGGUUAUCAACUAAUUUAUAUUUGAUuUGCU 938764 -.>>>>> 58 g.gagac 63 + :A::: 938765 UaAAAGA 938771 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1524,emb|8253916| 3052 bp 1 contigs ----isReversed: 1 ----hitSequence: UAUUUAAAUAUGAAUACAAAAAAUUAAAAAAUUUUAAUUAGUUUUUUAAUGAAAAUUUAAAUA ----ssRNAplot: (((((.....(((((.((((((((.....(((....))).))))))))))))).....))))) ----hitGC: 0.0634921 ----pairStats: 22,1,1,3 hit 153 : 2425 2363 (rev) 15.29 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___.>>>->>>>>>>>>>>>>>-----> 1 gucucuuuuAUGAuGaccucagccuAAAccccucu.gggcggcugagguCuGAUgccugg 59 :::U:+ UA+GA: A::::A:::UAAA :::U+U ::: :::U:::: :GA++ +U+: 628 UAUUUAAAUAUGAAUACAAAAAAUUAAAAAAUUUUaAUUAGUUUUUUA-AUGAAAAUUUA 686 >>>> 60 agac 63 A::: 687 AAUA 690 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1526,emb|8254718| 235511 bp 4 contigs ----isReversed: 0 ----hitSequence: UUUAGUUGCAUCAUAAAAGCUAUUUAAAUCGUUUCUCAGCUUAGUGCUUUUUGUAGCUGACUGAA ----ssRNAplot: (((((.....((((((((((((((.....(((....)))..)))))))))))))).....))))) ----hitGC: 0.323077 ----pairStats: 22,0,1,8 hit 154 : 61663 61727 (fwd) 16.89 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___.>>>-.>>>>>>>>>>>>>>----- 1 gucucuuuuAUGAuGaccucagccuAAAccccucu.gggc.ggcugagguCuGAUgccug 58 :U:::UU +A+:AU:A:::C+ : UAAA+C :U++ : GC : +G:::U:UG:+ +CUG 61663 UUUAGUUGCAUCAUAAAAGCUAUUUAAAUCGUUUCuCAGCuUAGUGCUUUUUGUA-GCUG 61721 .>>>>> 59 .gagac 63 :::A: 61722 aCUGAA 61727 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1530,emb|8254719| 598405 bp 5 contigs ----isReversed: 1 ----hitSequence: GCUAUUUUAUGAAAAUAAUAAUUUAAAACCAUAUCUAUGUAAUUAUUUUCAGAUCAAAAUU ----ssRNAplot: (((((....((((((((((((((......(((....))).))))))))))))))..))))) ----hitGC: 0.163934 ----pairStats: 22,0,1,8 hit 155 : 441198 441138 (rev) 19.16 bits <<<<<-----<<<<<<<<<<<<<<----.-<<<___.>>>->>>>>>>>>>>>>>----- 1 gucucuuuuAUGAuGaccucagccuAAA.ccccucu.gggcggcugagguCuGAUgccug 58 ::: :UUU AUGA::A :::A:::UAAA CC:: ++ ::G+:::U::: U::GAU C 157208 GCUAUUUU-AUGAAAAUAAUAAUUUAAAaCCAUAUCuAUGUAAUUAUUUUCAGAU-CA-- 157263 >>>>> 59 gagac 63 : ::: 157264 AAAUU 157268 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1536,emb|8254575| 163148 bp 3 contigs ----isReversed: 1 ----hitSequence: UUUAAUUUAUAUGUUGAAGUUAAAUAAAAAAAUUAAAUUAGUUUAUUUUUUAAGAUAUUUUAAA ----ssRNAplot: (((((......((((((((((((((.....(((...))).)))))))))))))).....))))) ----hitGC: 0.078125 ----pairStats: 22,0,4,3 hit 156 : 71840 71777 (rev) 16.78 bits <<<<<---.--<<<<<<<<<<<<<<-----<<<___>>>->>>>>>>>>>>>>>-----> 1 gucucuuu.uAUGAuGaccucagccuAAAccccucugggcggcugagguCuGAUgccugg 59 :U:::UUU UA+G:U:A: :A::: AAA :::U +::: :::U: :U:U:A++ U+: 91309 UUUAAUUUaUAUGUUGAAGUUAAAUAAAAAAAUUAAAUUAGUUUAUUUUUUAAGAUAUUU 91368 >>>> 60 agac 63 ::A: 91369 UAAA 91372 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1551,emb|8254722| 80693 bp 4 contigs ----isReversed: 1 ----hitSequence: AUUUUAUUAUGAAGGUAUUUUAAAAAAAUAUCUAAUGAAUAUUGUAUCAGAUAUAAAUAAGAU ----ssRNAplot: (((((....((((((((((((((.....(((...))).))))))))))))))......))))) ----hitGC: 0.142857 ----pairStats: 22,0,4,7 hit 157 : 50215 50153 (rev) 14.09 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___>>>->>>>>>>>>>>>>>.-----> 1 gucucuuuuAUGAuGaccucagccuAAAccccucugggcggcugagguCuGAU.gccugg 59 :U:U:+UU AUGA:G::: +:: AAA :::+++::: ::+ :::C:GAU +: 30479 AUUUUAUU-AUGAAGGUAUUUUAAAAAAAUAUCUAAUGAAUAUUGUAUCAGAUaUAAAUA 30537 >>>> 60 agac 63 A:A: 30538 AGAU 30541 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1566,emb|8254580| 399732 bp 5 contigs ----isReversed: 0 ----hitSequence: UUCAUCUUAUGAAUAUGAAUUUCGCAAUCUUCUUCUACAUCUGGAAUUUCUUUGAUCCUGCUAUCAA ----ssRNAplot: (((((....((((((((((((((.....(((.....)))...))))))))))))))......))))) ----hitGC: 0.313433 ----pairStats: 22,0,2,8 hit 158 : 316506 316572 (fwd) 14.24 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___..>>>-..>>>>>>>>>>>>>>--- 1 gucucuuuuAUGAuGaccucagccuAAAccccucu..gggc..ggcugagguCuGAUgcc 56 :U :: UU AUGA: A :::::C+ AA+ :++U : + G::::: U :GAU CC 316506 UUCAUCUU-AUGAAUAUGAAUUUCGCAAUCUUCUUcuACAUcuGGAAUUUCUUUGAU-CC 316563 --..>>>>> 57 ug..gagac 63 UG :: A: 316564 UGcuAUCAA 316572 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1575,emb|8254582| 1075194 bp 7 contigs ----isReversed: 0 ----hitSequence: UUUAUAGAUAAUGAAAUCAAAUUAUUAAAGCACUAACUAGCUAGGGGGUUGAUUGAUUGAUUAAUUAA ----ssRNAplot: (((((......((((((((((((((......(((....)))..))))))))))))))......))))) ----hitGC: 0.25 ----pairStats: 22,0,3,7 hit 159 : 3667 3734 (fwd) 14.16 bits <<<<<---.--<<<<<<<<<<<<<<----.-<<<___.>>>-.>>>>>>>>>>>>>>--- 1 gucucuuu.uAUGAuGaccucagccuAAA.ccccucu.gggc.ggcugagguCuGAUgcc 56 :U:::+ AUGA:::C:: +:::UAAA C C: + :G + :::+ ::G:::GAU + 3667 UUUAUAGAuAAUGAAAUCAAAUUAUUAAAgCACUAACuAGCUaGGGGGUUGAUUGAUUGA 3726 --.>>>>> 57 ug.gagac 63 U+ :::A: 3727 UUaAUUAA 3734 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1576,emb|8254728| 224744 bp 1 contigs ----isReversed: 1 ----hitSequence: AUUUCUUUUAUAAGAAUUUAAUUUACUAAAGUCUUCAUAAGAAAAUUAAAUUAGCUAUUUUAUUGGGAAAC ----ssRNAplot: (((((.....((((((((((((((........(((...))).))))))))))))))..........))))) ----hitGC: 0.183099 ----pairStats: 22,0,0,5 hit 160 : 91394 91324 (rev) 14.19 bits <<<<<-----<<<<<<<<<<<<<<..----.-<<<___>>>->>>>>>>>>>>>>>---- 1 gucucuuuuAUGAuGaccucagcc..uAAA.ccccucugggcggcugagguCuGAUgccu 57 U:UCUUUUAU A :A::U:A::: UAAA +C::+ U::G :::U:A::U: G U+ +U 133351 AUUUCUUUUAUAAGAAUUUAAUUUacUAAAgUCUUCAUAAGAAAAUUAAAUUAGCUAUUU 133410 -.....>>>>> 58 g.....gagac 63 + GA:A 133411 UauuggGAAAC 133421 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1583,emb|8254584| 383217 bp 3 contigs ----isReversed: 1 ----hitSequence: UUCUCAUAAAUGAAGAGUUGAAAUAAUAAGCUUUGAUUUAAGCUCCUUCAAUUCUGAACUCUAAAAA ----ssRNAplot: (((((.....((((((((((((((......(((......)))..))))))))))))))....))))) ----hitGC: 0.268657 ----pairStats: 22,0,1,6 hit 161 : 298359 298293 (rev) 14.44 bits <<<<<-----<<<<<<<<<<<<<<--.---<<<___...>>>-.>>>>>>>>>>>>>>-- 1 gucucuuuuAUGAuGaccucagccuA.AAccccucu...gggc.ggcugagguCuGAUgc 55 :U U +U A+GA:GA::U:A: A AA+C::U + ::GC :U:A::UC:GA+ C 84859 UUCUCAUAAAUGAAGAGUUGAAAUAAuAAGCUUUGAuuuAAGCuCCUUCAAUUCUGAA-C 84917 --->>>>> 56 cuggagac 63 +++ A A: 84918 UCUAAAAA 84925 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1583,emb|8254584| 383217 bp 3 contigs ----isReversed: 1 ----hitSequence: CAUAUUUUAAUUCGAGAACUAAGUAAAGCUUUUUAAACUUUAGUUUUCCAAGCUUUUAAGGG ----ssRNAplot: (((((....((((((((((((((.....(((...))).)))))))))))))).....))))) ----hitGC: 0.274194 ----pairStats: 22,0,3,5 hit 162 : 95264 95203 (rev) 14.20 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___>>>->>>>>>>>>>>>>>-----.> 1 gucucuuuuAUGAuGaccucagccuAAAccccucugggcggcugagguCuGAUgccug.g 59 ::: :UUU A::::GA:::C::: UAAA+ ::U+U:: C :::G:::UC:::: C+U+ : 287954 CAUAUUUU-AAUUCGAGAACUAAGUAAAGCUUUUUAAACUUUAGUUUUCCAAG-CUUUuA 288011 >>>> 60 agac 63 ::: 288012 AGGG 288015 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1583,emb|8254584| 383217 bp 3 contigs ----isReversed: 1 ----hitSequence: AUUUUCAAAUGAAGGUUUUUUUUAAAAUCUCACUGAGCAAGAAAAGAACCGGAAAUAAAUAU ----ssRNAplot: (((((....((((((((((((((.....(((...)))...))))))))))))))...))))) ----hitGC: 0.258065 ----pairStats: 22,0,2,4 hit 163 : 85388 85327 (rev) 20.82 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___>>>-..>>>>>>>>>>>>>>----- 1 gucucuuuuAUGAuGaccucagccuAAAccccucugggc..ggcugagguCuGAUgccug 58 :U:U: A+GA G::: ::::: AAA+C:C CUG:GC ::::: :::C GA+ + 297830 AUUUUCAA-AUGAAGGUUUUUUUUAAAAUCUCACUGAGCaaGAAAAGAACCGGAA-AUA- 297886 >>>>> 59 gagac 63 :A:A: 297887 AAUAU 297891 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1592,emb|8254589| 153188 bp 2 contigs ----isReversed: 0 ----hitSequence: UUGUUACUAUGUUAGGAAUUUUUUAAAGGUUUUUACGACUAGAUUUUUAUAUAAUUAUAAGAA ----ssRNAplot: (((((....((((((((((((((.....(((..)))..))))))))))))))......))))) ----hitGC: 0.190476 ----pairStats: 22,0,3,7 hit 164 : 68067 68129 (fwd) 14.45 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___>>>.->>>>>>>>>>>>>>.----- 1 gucucuuuuAUGAuGaccucagccuAAAccccucuggg.cggcugagguCuGAU.gccug 58 :U+U:+ U AUG: ::::::+: UAAA+:: U+ :: :+:::::: :AU + + + 68067 UUGUUACU-AUGUUAGGAAUUUUUUAAAGGUUUU-UACgACUAGAUUUUUAUAUaAUUAU 68124 >>>>> 59 gagac 63 :A+A: 68125 AAGAA 68129 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1600,emb|8253930| 173734 bp 2 contigs ----isReversed: 1 ----hitSequence: AUGUUAGUAAUGAAGGUUACGCAUUAAAGAAUUUUUAUCUAUUUGUAGCCAUGAUACUUGUUUAACUU ----ssRNAplot: (((((.....((((((((((((((.....(((....))).)))))))))).))))........))))) ----hitGC: 0.264706 ----pairStats: 22,0,2,6 hit 165 : 171250 171183 (rev) 15.67 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___.>>>->>>>>>>>>>.>>>>----- 1 gucucuuuuAUGAuGaccucagccuAAAccccucu.gggcggcugagguC.uGAUgccug 58 :+:U:+ U AUGA:G::::C ::UAAA+ ::U+U :: +:: G::::C :GAU+C+UG 2485 AUGUUAGUAAUGAAGGUUACGCAUUAAAGAAUUUUuAUCUAUUUGUAGCCaUGAUACUUG 2544 ...>>>>> 59 ...gagac 63 :A:+: 2545 uuuAACUU 2552 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1616,emb|8254590| 838362 bp 7 contigs ----isReversed: 0 ----hitSequence: CUUUUAUUAAGGUAAUAAUUUAUUUAAAUACUUAAUUAGAUUAAUUAUUAAUUAAUAAGUG ----ssRNAplot: (((((.....((((((((((((((.....(((..))).))))))))))))))....))))) ----hitGC: 0.114754 ----pairStats: 22,0,3,4 hit 166 : 728994 729054 (fwd) 14.55 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___>>>->>>>>>>>>>>>>>----->> 1 gucucuuuuAUGAuGaccucagccuAAAccccucugggcggcugagguCuGAUgccugga 60 :+:U:+UU A:G::::::U:+:::UAAA+:::U ::: :::+:A::::::A: +:A 728994 CUUUUAUUAAGGUAAUAAUUUAUUUAAAUACUUA-AUUAGAUUAAUUAUUAAU-UAAUAA 729051 >>> 61 gac 63 :+: 729052 GUG 729054 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1616,emb|8254590| 838362 bp 7 contigs ----isReversed: 0 ----hitSequence: AGUACACUAAGAUAACAACUACUUAAACCCUCAUCAAUGCUAGUUUUUAUUUGGACAUUUAGGUACA ----ssRNAplot: (((((....((((((((((((((.....(((.....)))..)))))))))))))).......))))) ----hitGC: 0.313433 ----pairStats: 22,0,0,9 hit 167 : 765733 765799 (fwd) 13.95 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___..>>>-.>>>>>>>>>>>>>>---- 1 gucucuuuuAUGAuGaccucagccuAAAccccucu..gggc.ggcugagguCuGAUgccu 57 :::C+ U A: AU:A::: +:C:UAAACC::+ U ::GC :G:+ :::U:UG : C U 765733 AGUACACU-AAGAUAACAACUACUUAAACCCUCAUcaAUGCuAGUUUUUAUUUGGA-CAU 765790 -...>>>>> 58 g...gagac 63 + G::: 765791 UuagGUACA 765799 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1616,emb|8254590| 838362 bp 7 contigs ----isReversed: 0 ----hitSequence: UUUUUUUUAAUUAUAUCAAUUUUUAAAUUUUAUAAAAUUGAUGAAUUAAUUGAUUUAAAAAA ----ssRNAplot: (((((.....(((((((((((((.....(((...)))..))..)))))))))))...))))) ----hitGC: 0.0645161 ----pairStats: 22,1,1,4 hit 168 : 798851 798912 (fwd) 14.12 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___>>>-.>>>.>>>>>>>>>>>----- 1 gucucuuuuAUGAuGaccucagccuAAAccccucugggc.ggc.ugagguCuGAUgccug 58 :U:U:UUU AU:AU::::::: ::UAAA+::: ++:::+ :: :::::::UG:U + 798851 UUUUUUUUAAUUAUAUCAAUU-UUUAAAUUUUAUAAAAUuGAUgAAUUAAUUGAU-UUA- 798907 >>>>> 59 gagac 63 :A:A: 798908 AAAAA 798912 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1617,emb|8254736| 272088 bp 4 contigs ----isReversed: 1 ----hitSequence: UUUUUGUGUAUGAAAAAAUUGUAUGAAAUGCAUUUAUGCAUUAAGCCAUUAUAGAUUCAAUUA ----ssRNAplot: (((((.....((((((((((((((.....(((....)))...))))))))))))))..))))) ----hitGC: 0.222222 ----pairStats: 22,0,1,9 hit 169 : 147515 147453 (rev) 14.21 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___.>>>.-.>>>>>>>>>>>>>>---- 1 gucucuuuuAUGAuGaccucagccuAAAccccucu.ggg.c.ggcugagguCuGAUgccu 57 :+:U: U UAUGA:: ::U :: :+AAA+:C:U+U :G: + : :: A:: ::GAU C 124574 UUUUUGUGUAUGAAAAAAUUGUAUGAAAUGCAUUUaUGCaUuAAGCCAUUAUAGAU-UC- 124631 ->>>>> 58 ggagac 63 :A:+: 124632 -AAUUA 124636 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1622,emb|8254737| 250189 bp 3 contigs ----isReversed: 1 ----hitSequence: UUUUUUUUUAUGAAAAUUUAAAAUUGAAAUAUUUUAUAGAUUUUUAUUUUGAUUUCUUUAGAUA ----ssRNAplot: (((((.....((((((((((((((.....(((...))).))))))))))))))......))))) ----hitGC: 0.09375 ----pairStats: 22,0,1,6 hit 170 : 9654 9591 (rev) 17.62 bits <<<<<-----<<<<<<<<<<<<<<.-----<<<___>>>.->>>>>>>>>>>>>>.---- 1 gucucuuuuAUGAuGaccucagcc.uAAAccccucuggg.cggcugagguCuGAU.gccu 57 :+: :UUUUAUGA::A : :A::: +AAA :::U+U::: :::U: : U::GAU C+U 240536 UUUUUUUUUAUGAAAAUUUAAAAUuGAAA-UAUUUUAUAg-AUUUUUAUUUUGAUuUCUU 240593 ->>>>> 58 ggagac 63 +: :+: 240594 UAGAUA 240599 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1625,emb|8254592| 404784 bp 2 contigs ----isReversed: 0 ----hitSequence: UUUAAUUUAAUGAGAAUUACUUUUAAUAUUUUGAAUAAGAAAAAAGUAAAUUGAUUCUGAUUAAA ----ssRNAplot: (((((.....((((((((((((((.....(((....)))..)))))))))))))).....))))) ----hitGC: 0.138462 ----pairStats: 22,0,2,4 hit 171 : 253379 253443 (fwd) 15.95 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___.>>>-.>>>>>>>>>>>>>>----- 1 gucucuuuuAUGAuGaccucagccuAAAccccucu.gggc.ggcugagguCuGAUgccug 58 :U:::UUU AUGA:: :::C:::: A A+::: + ::: ::::G::: ::GAU CUG 253379 UUUAAUUUAAUGAGAAUUACUUUUAAUAUUUUGAAuAAGAaAAAAGUAAAUUGAU-UCUG 253437 .>>>>> 59 .gagac 63 :::A: 253438 aUUAAA 253443 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1629,emb|8254593| 533928 bp 3 contigs ----isReversed: 0 ----hitSequence: AUCUUAGGAAUGAGAAAAUUAAUUGAAAUAUAAAUUAAUAGUGAAUAUUUGAAAAUAUAAAAAU ----ssRNAplot: (((((.....((((((((((((((.....(((...))).))))))))))))))......))))) ----hitGC: 0.140625 ----pairStats: 22,0,2,6 hit 172 : 177420 177483 (fwd) 15.25 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___>>>->>>>>>>>>>>>>>-----.> 1 gucucuuuuAUGAuGaccucagccuAAAccccucugggcggcugagguCuGAUgccug.g 59 :U U:+ A+GA::A :U: :::+AAA+ :: U:: +::: :A: U::GA++ + + : 177420 AUCUUAGGAAUGAGAAAAUUAAUUGAAAUAUAAAUUAAUAGUGAAUAUUUGAAAAUAUaA 177479 >>>> 60 agac 63 A A: 177480 AAAU 177483 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1629,emb|8254593| 533928 bp 3 contigs ----isReversed: 0 ----hitSequence: UAUUUUUCUAUUAAAAAAAUAAAAAUAUUUUUCAUAAAUUAUUUUUAGAGCUUGAAAAUA ----ssRNAplot: (((((.....((((((((((((....(((...)))...)))))))))))).....))))) ----hitGC: 0.1 ----pairStats: 22,2,1,3 hit 173 : 316438 316497 (fwd) 15.20 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___>>>->>>>>>>>>>>>>>-----.> 1 gucucuuuuAUGAuGaccucagccuAAAccccucugggcggcugagguCuGAUgccug.g 59 :::U:UU+UA+:A::A::::A: AAA+:::U+U::: :U::::U::G:+ C+UG : 316438 UAUUUUUCUAUUAAAAAAAUAA---AAAUAUUUUUCAUAAAUUAUUUUUAGAG-CUUGaA 316493 >>>> 60 agac 63 A::: 316494 AAUA 316497 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1629,emb|8254593| 533928 bp 3 contigs ----isReversed: 1 ----hitSequence: GACUAAUUUUGAUAAUAAUAAUGUAAAACAUAUUCACGAGCUUUGAUUAUUUGAUCAUUUUGUU ----ssRNAplot: (((((....((((((((((((((.....(((....)))...))))))))))))))....))))) ----hitGC: 0.21875 ----pairStats: 22,0,2,8 hit 174 : 176140 176077 (rev) 14.52 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___.>>>-..>>>>>>>>>>>>>>---- 1 gucucuuuuAUGAuGaccucagccuAAAccccucu.gggc..ggcugagguCuGAUgccu 57 ::C :+UU UGAU:A:::: : UAAA C : +U : G : ::::U:UGAU C U 357789 GACUAAUU-UUGAUAAUAAUAAUGUAAAACAUAUUcACGAgcUUUGAUUAUUUGAU-CAU 357846 ->>>>> 58 ggagac 63 +: G:: 357847 UUUGUU 357852 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1633,emb|8254594| 762169 bp 6 contigs ----isReversed: 0 ----hitSequence: UUCUGAAUAAGAAGAAAAUUAAUAAAAGCCUAAAGAAGUUGAUGCUCUGAGCUUUAUUAUGAA ----ssRNAplot: (((((....((((((((((((((.....(((..))).)))))))))))))).......))))) ----hitGC: 0.269841 ----pairStats: 22,0,2,8 hit 175 : 4840 4902 (fwd) 14.93 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___>>>->>>>>>>>>>>>>>-----.. 1 gucucuuuuAUGAuGaccucagccuAAAccccucugggcggcugagguCuGAUgccug.. 58 :UC + U A:GA:GA: ::+::: AAA+ C: :G :::+:: :UC:GA: C+U+ 4840 UUCUGAAU-AAGAAGAAAAUUAAUAAAAGCCUAA-AGAAGUUGAUGCUCUGAG-CUUUau 4896 .>>>>> 59 .gagac 63 GA: 4897 uAUGAA 4902 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1633,emb|8254594| 762169 bp 6 contigs ----isReversed: 0 ----hitSequence: UUUUCCUCAAAAAGAUAAGCGAUAAUGAAACCCAUUUCUUAUCUUAUUAUCGUUUUGACAUAGGAUAU ----ssRNAplot: (((((.......((((((((((((((.....(((....)))....))))))))))))))....))))) ----hitGC: 0.279412 ----pairStats: 22,0,1,8 hit 176 : 27754 27821 (fwd) 14.37 bits <<<<<---..--<<<<<<<<<<<<<<-----<<<___.>>>-...>>>>>>>>>>>>>>- 1 gucucuuu..uAUGAuGaccucagccuAAAccccucu.gggc...ggcugagguCuGAUg 54 U:UC U+ A:GAU:A:C::::::+AAAC ::U+U :: + ::::::G:U:UGA: 27754 UUUUCCUCaaAAAGAUAAGCGAUAAUGAAACCCAUUUcUUAUcuuAUUAUCGUUUUGAC- 27812 ---->>>>> 55 ccuggagac 63 + GGA:A 27813 AUAGGAUAU 27821 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1633,emb|8254594| 762169 bp 6 contigs ----isReversed: 0 ----hitSequence: UAUAAAAUAUGUUGAAUUAUUUAUAAAUAAUUUUAAUAUAAAUAAUUUAAAUAGUUAGUUAGA ----ssRNAplot: (((((....((((((((((((((.....(((...))).))))))))))))))......))))) ----hitGC: 0.0793651 ----pairStats: 22,0,1,4 hit 177 : 106567 106629 (fwd) 14.48 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___>>>->>>>>>>>>>>>>>.-----> 1 gucucuuuuAUGAuGaccucagccuAAAccccucugggcggcugagguCuGAU.gccugg 59 :::::+ U AUG: :A::U:::::UAAA+: :U+U: : :::::A::U: :AU G + G: 106567 UAUAAAAU-AUGUUGAAUUAUUUAUAAAUAAUUUUAAUAUAAAUAAUUUAAAUaGUUAGU 106625 >>>> 60 agac 63 :::: 106626 UAGA 106629 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1633,emb|8254594| 762169 bp 6 contigs ----isReversed: 0 ----hitSequence: UUUUGAUGCAAGAUAAUAAAAUGAUAAAAAAAAUUUUUUUUAAUUUUAUUUGAUAAAUUCUAUCAUAA ----ssRNAplot: (((((.....((((((((((((((.....(((....))).)))))))))))))).........))))) ----hitGC: 0.117647 ----pairStats: 22,0,0,5 hit 178 : 249750 249817 (fwd) 15.53 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___.>>>->>>>>>>>>>>>>>..---- 1 gucucuuuuAUGAuGaccucagccuAAAccccucu.gggcggcugagguCuGAU..gccu 57 :U:U:+U +A:GAU:A::::A: :UAAA ::: +U :::+: :U::::U:UGA: + ++ 249750 UUUUGAUGCAAGAUAAUAAAAUGAUAAAAAAAAUUuUUUUUAAUUUUAUUUGAUaaAUUC 249809 -..>>>>> 58 g..gagac 63 + :A:A: 249810 UauCAUAA 249817 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1633,emb|8254594| 762169 bp 6 contigs ----isReversed: 1 ----hitSequence: UUAAUGUUAAUGAUAAUAUGUUUGUAAAAAAAUGCUAGUUCAAUAUAGAUUUGAUAGAUUUAUCAA ----ssRNAplot: (((((.....((((((((((((((......(((....))).))))))))))))))......))))) ----hitGC: 0.181818 ----pairStats: 22,0,2,8 hit 179 : 491709 491644 (rev) 14.16 bits <<<<<-----<<<<<<<<<<<<<<----.-<<<___.>>>->>>>>>>>>>>>>>.---- 1 gucucuuuuAUGAuGaccucagccuAAA.ccccucu.gggcggcugagguCuGAU.gccu 57 :U :: UU AUGAU:A: U : : UAAA :: CU ::C : : A :U:UGAU G +U 270461 UUAAUGUUAAUGAUAAUAUGUUUGUAAAaAAAUGCUaGUUCAAUAUAGAUUUGAUaGAUU 270520 ->>>>> 58 ggagac 63 +:: A: 270521 UAUCAA 270526 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1636,emb|8254595| 152962 bp 1 contigs ----isReversed: 1 ----hitSequence: AUGACCUAAUGAAAGCCUUUCCUAAAAGAAAGAAACUCUUUUGAGUAAGAUUUGAUUUUGGUACU ----ssRNAplot: (((((....((((((((((((((.....(((.......))).))))))))))))))....))))) ----hitGC: 0.307692 ----pairStats: 22,0,2,8 hit 180 : 12961 12897 (rev) 15.04 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___....>>>->>>>>>>>>>>>>>--- 1 gucucuuuuAUGAuGaccucagccuAAAccccucu....gggcggcugagguCuGAUgcc 56 : :C U AUGA::::CU:+::: AAA+::: + :::+:::+:AG::::GAU + 140002 AUGACCUA-AUGAAAGCCUUUCCUAAAAGAAAGAAacucUUUUGAGUAAGAUUUGAU-UU 140059 -->>>>> 57 uggagac 63 UGG: : 140060 UGGUACU 140066 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1640,emb|8254597| 644724 bp 5 contigs ----isReversed: 0 ----hitSequence: CUUAGAAGAUGCUAAAGUUUUAUUAAAGAUUAAUAAAUUAAGCAUCAAAUAUUUGAUGUAUGUAAG ----ssRNAplot: (((((....((((((((((((((.....(((....))).....))))))))))))))....))))) ----hitGC: 0.212121 ----pairStats: 22,0,1,6 hit 181 : 253812 253877 (fwd) 13.96 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___.>>>-....>>>>>>>>>>>>>>-- 1 gucucuuuuAUGAuGaccucagccuAAAccccucu.gggc....ggcugagguCuGAUgc 55 :U::++ AUG:U:A U:: ::UAAA+::: U :::+ :: ::A U:U:AU + 253812 CUUAGAAG-AUGCUAAAGUUUUAUUAAAGAUUAAUaAAUUaagcAUCAAAUAUUUGAU-G 253869 --->>>>> 56 cuggagac 63 + ++::A: 253870 UAUGUAAG 253877 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1660,emb|8254745| 558660 bp 4 contigs ----isReversed: 0 ----hitSequence: UUUUUAGAAUCAUAAUAAAUAAAUAAAUAAAUACUUGCUUCUUUAUUUGAAUUUAAAAA ----ssRNAplot: (((((....((((((((((((((....(((....)))))))))))))))))...))))) ----hitGC: 0.118644 ----pairStats: 22,0,1,5 hit 182 : 388812 388870 (fwd) 17.56 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___.>>>->>>>>>>>>>>>>>-----> 1 gucucuuuuAUGAuGaccucagccuAAAccccucu.gggcggcugagguCuGAUgccugg 59 :U:U:+ A+:AU:A::::+:::UAAA ::: ++ ::: :::+::::U:UG:+ +U : 388812 UUUUUAGA-AUCAUAAUAAAUAAAUAAA-UAAAUAcUUG-CUUCUUUAUUUGAA-UUU-A 388866 >>>> 60 agac 63 A:A: 388867 AAAA 388870 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1660,emb|8254745| 558660 bp 4 contigs ----isReversed: 0 ----hitSequence: UAUUUGGAAUUAAAGCAAGAAAUUAAACUAAAUUUAAUCCUUGUUUGUUUGUGGCUUAAAUA ----ssRNAplot: (((((....((((((((((((((.....(((...)))..))))))))))))))....))))) ----hitGC: 0.225806 ----pairStats: 22,0,3,5 hit 183 : 500479 500540 (fwd) 14.56 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___>>>-.>>>>>>>>>>>>>>-----> 1 gucucuuuuAUGAuGaccucagccuAAAccccucugggc.ggcugagguCuGAUgccugg 59 :::U: A+:A:::C:: :: UAAAC: : +U: :+ :: ::G:::G:+ +CU+: 500479 UAUUUGGA-AUUAAAGCAAGAAAUUAAACUAAAUUUAAUcCUUGUUUGUUUGUG-GCUUA 500536 >>>> 60 agac 63 A::: 500537 AAUA 500540 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1660,emb|8254745| 558660 bp 4 contigs ----isReversed: 1 ----hitSequence: AUUUUAUUUAUUAAAUUUAUUUAUGAAAUAUUUUCAAAUUUAAAUAAAUAGCAAGGUUAAAUU ----ssRNAplot: (((((.....((((((((((((((.....(((...))).)))))))))))))).....))))) ----hitGC: 0.0952381 ----pairStats: 22,0,0,6 hit 184 : 531912 531850 (rev) 17.74 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___>>>->>>>>>>>>>>>>>----->> 1 gucucuuuuAUGAuGaccucagccuAAAccccucugggcggcugagguCuGAUgccugga 60 :+:U:+UUUA+:A:::::::::: +AAA+ ::U++:: + ::::::::::G:+++ U+:A 26749 AUUUUAUUUAUUAAAUUUAUUUAUGAAAUAUUUUCAAAUUUAAAUAAAUAGCAAGGUUAA 26808 >>> 61 gac 63 :+: 26809 AUU 26811 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1666,emb|8254747| 1051704 bp 4 contigs ----isReversed: 1 ----hitSequence: ACUAAUUCUAUGAUCAAAUUUACUACAAAUUUGCAGAAGUAGAAAAUUUAUGAUUCAUUUUUU ----ssRNAplot: (((((.....((((((((((((((.....(((....))).))))))))))))))....))))) ----hitGC: 0.206349 ----pairStats: 22,0,1,8 hit 185 : 599461 599399 (rev) 14.57 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___.>>>->>>>>>>>>>>>>>-----> 1 gucucuuuuAUGAuGaccucagccuAAAccccucu.gggcggcugagguCuGAUgccugg 59 :::::UU+UAUGAU A::U:: C: AA ::: C+ :::+:G ::A::U UGAU C +: 452244 ACUAAUUCUAUGAUCAAAUUUACUACAAAUUUGCAgAAGUAGAAAAUUUAUGAU-UCAUU 452302 >>>> 60 agac 63 :::: 452303 UUUU 452306 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1670,emb|8254749| 103417 bp 4 contigs ----isReversed: 0 ----hitSequence: UUAAUUUUAUAUGAAAUUUAAUUUUUAAAUUAAACAAUUAUAAAACUAAAAAGAUGUUUUUUAUAAA ----ssRNAplot: (((((......((((((((((((((.....(((....))).)))))))))))))).......))))) ----hitGC: 0.0746269 ----pairStats: 22,0,0,7 hit 186 : 66616 66682 (fwd) 20.01 bits <<<<<---.--<<<<<<<<<<<<<<-----<<<___.>>>->>>>>>>>>>>>>>----- 1 gucucuuu.uAUGAuGaccucagccuAAAccccucu.gggcggcugagguCuGAUgccug 58 :U:::UUU UAUGA:::::::::::UAAA+::: C+ :::+:::::::::::GAUG +U+ 66616 UUAAUUUUaUAUGAAAUUUAAUUUUUAAAUUAAACAaUUAUAAAACUAAAAAGAUGUUUU 66675 ..>>>>> 59 ..gagac 63 :::A: 66676 uuAUAAA 66682 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1681,emb|8254752| 1171415 bp 14 contigs ----isReversed: 0 ----hitSequence: AUUUAAUUUAUUACAAUAAAUAACUAAAGUAUAAAAAAUAGAGUUGUUUGUUUGUAUUAUUUAAGU ----ssRNAplot: (((((.....((((((((((((((.....(((.....)))..)))))))))))))).....))))) ----hitGC: 0.136364 ----pairStats: 22,0,3,3 hit 187 : 699862 699927 (fwd) 15.61 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___..>>>.->>>>>>>>>>>>>>---- 1 gucucuuuuAUGAuGaccucagccuAAAccccucu..ggg.cggcugagguCuGAUgccu 57 :+:U:+UUUA+:A::A::::+::CUAAA+::: + ::: G::+::::U::G:+ + 699862 AUUUAAUUUAUUACAAUAAAUAACUAAAGUAUAAAaaAUAgAGUUGUUUGUUUGUA-UUA 699920 -.>>>>> 58 g.gagac 63 + :A:+: 699921 UuUAAGU 699927 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1681,emb|8254752| 1171415 bp 14 contigs ----isReversed: 1 ----hitSequence: GAUUCAUCAAAUGAUGGUAAUAUAUCAAUCAAUCAAAUAAAUAUAAUUUUUGAAGCAUGAAUU ----ssRNAplot: (((((......((((((((((((((.....(((...))).))))))))))))))....))))) ----hitGC: 0.206349 ----pairStats: 22,0,3,6 hit 188 : 148311 148249 (rev) 14.40 bits <<<<<---.--<<<<<<<<<<<<<<----.-<<<___>>>->>>>>>>>>>>>>>----- 1 gucucuuu.uAUGAuGaccucagccuAAA.ccccucugggcggcugagguCuGAUgccug 58 :::UC+U+ A+GAU:: : :A::: AA C ::+ +:: :::U: : ::UGA+ +C + 1023105 GAUUCAUCaAAUGAUGGUAAUAUAUCAA-uCAAUCAAAUAAAUAUAAUUUUUGAA-GCAU 1023162 >>>>> 59 gagac 63 GA::: 1023163 GAAUU 1023167 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1687,emb|8254754| 392787 bp 12 contigs ----isReversed: 0 ----hitSequence: UUUUUAAAUAUGAAAAAAUAAUAGAUAGAUGAUAAAGAUCAGUAUUAAUUUUGAUGAAUCUAAAAA ----ssRNAplot: (((((.....((((((((((((((......(((....))).))))))))))))))......))))) ----hitGC: 0.151515 ----pairStats: 22,0,0,5 hit 189 : 52587 52652 (fwd) 16.61 bits <<<<<-----<<<<<<<<<<<<<<.-----<<<___.>>>->>>>>>>>>>>>>>.---- 1 gucucuuuuAUGAuGaccucagcc.uAAAccccucu.gggcggcugagguCuGAU.gccu 57 :U:U:+ UAUGA::A: U:A::+ UA A+::: + ::: +::U:A :U::GAU + ++ 52587 UUUUUAAAUAUGAAAAAAUAAUAGaUAGAUGAUAAAgAUCAGUAUUAAUUUUGAUgAAUC 52646 ->>>>> 58 ggagac 63 +:A:A: 52647 UAAAAA 52652 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1687,emb|8254754| 392787 bp 12 contigs ----isReversed: 0 ----hitSequence: UUUUUAAAUAUGAAAAAAUAAUAUAUAGAUGAUAAAGAUCAGUAUUAAUUUUGAUAAAUCUAAAAA ----ssRNAplot: (((((.....((((((((((((((......(((....))).))))))))))))))......))))) ----hitGC: 0.121212 ----pairStats: 22,0,1,4 hit 190 : 55319 55384 (fwd) 17.94 bits <<<<<-----<<<<<<<<<<<<<<.-----<<<___.>>>->>>>>>>>>>>>>>.---- 1 gucucuuuuAUGAuGaccucagcc.uAAAccccucu.gggcggcugagguCuGAU.gccu 57 :U:U:+ UAUGA::A: U:A::: UA A+::: + ::: :::U:A :U::GAU + ++ 55319 UUUUUAAAUAUGAAAAAAUAAUAUaUAGAUGAUAAAgAUCAGUAUUAAUUUUGAUaAAUC 55378 ->>>>> 58 ggagac 63 +:A:A: 55379 UAAAAA 55384 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1726,emb|8254761| 125722 bp 2 contigs ----isReversed: 0 ----hitSequence: UUGUAAUUUAAUGAAAAGUUUUGAUAUAAAAUAUAUUAAAAAUAAAAGUAUUGAUAAUUUUUACAA ----ssRNAplot: (((((......((((((((((((((......(((...))).))))))))))))))......))))) ----hitGC: 0.106061 ----pairStats: 22,0,2,6 hit 191 : 10570 10635 (fwd) 15.79 bits <<<<<---.--<<<<<<<<<<<<<<.-----<<<___>>>->>>>>>>>>>>>>>.---- 1 gucucuuu.uAUGAuGaccucagcc.uAAAccccucugggcggcugagguCuGAU.gccu 57 :U:U:+UU AUGA:: ::U:: :: UAAA : : +U: : :: ::A:: ::GAU + +U 10570 UUGUAAUUuAAUGAAAAGUUUUGAUaUAAAAUAUAUUAAAAAUAAAAGUAUUGAUaAUUU 10629 ->>>>> 58 ggagac 63 +:A:A: 10630 UUACAA 10635 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1792,emb|8253974| 55028 bp 1 contigs ----isReversed: 0 ----hitSequence: UUUUCAUUAUUUUAAUAAAUAAUGCUAAAUGUUGCCCGCCAUUAAUUAUUUAUUGUCUGAAAA ----ssRNAplot: (((((....((((((((((((((.......(((...))).))))))))))))))....))))) ----hitGC: 0.222222 ----pairStats: 22,0,1,5 hit 192 : 16927 16989 (fwd) 14.03 bits <<<<<-----<<<<<<<<<<<<<<..-----<<<___>>>->>>>>>>>>>>>>>----- 1 gucucuuuuAUGAuGaccucagcc..uAAAccccucugggcggcugagguCuGAUgccug 58 :U:UC+UU AU::U:A::: :::: UAAA+: : C+: :C:::: :::U:U::U ++++ 16927 UUUUCAUU-AUUUUAAUAAAUAAUgcUAAAUGUUGCCCGCCAUUAAUUAUUUAUU-GUCU 16984 >>>>> 59 gagac 63 GA:A: 16985 GAAAA 16989 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1793,emb|8254776| 1004159 bp 7 contigs ----isReversed: 0 ----hitSequence: CAUUUUUUUUUGAAAUUAAUCAAUUAAAGAUAAUAUCUUAUAUUAGUAGAUUUUUGAAUUG ----ssRNAplot: (((((.....((((((((((((((....(((...))))))))))))))))).....))))) ----hitGC: 0.147541 ----pairStats: 22,0,1,8 hit 193 : 333048 333108 (fwd) 16.42 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___>>>->>>>>>>>>>>>>>----->> 1 gucucuuuuAUGAuGaccucagccuAAAccccucugggcggcugagguCuGAUgccugga 60 :::U:UUUU UGA:: :::: : UAAA ::: U::: : :::: ::GAU +UG:A 333048 CAUUUUUUUUUGAAAUUAAUCAAUUAAA-GAUAAUAUC-UUAUAUUAGUAGAUUUUUGAA 333105 >>> 61 gac 63 ::: 333106 UUG 333108 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1793,emb|8254776| 1004159 bp 7 contigs ----isReversed: 1 ----hitSequence: UUUACUUUAUAAAAAUAUAUAAUUAAAUCUAACUAAACUUAUAUUUUAGAAUCUUGCAAA ----ssRNAplot: (((((....((((((((((((((....(((....)))))))))))))))))....))))) ----hitGC: 0.133333 ----pairStats: 22,0,0,7 hit 194 : 218022 217963 (rev) 18.95 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___.>>>->>>>>>>>>>>>>>-----> 1 gucucuuuuAUGAuGaccucagccuAAAccccucu.gggcggcugagguCuGAUgccugg 59 :U: CUUU A+ A::A :U:::: UAAA ::: + ::: ::::A: U::G + CU+G 786138 UUUACUUU-AUAAAAAUAUAUAAUUAAA-UCUAACuAAA-CUUAUAUUUUAGAA-UCUUG 786193 >>>> 60 agac 63 :A: 786194 CAAA 786197 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1793,emb|8254776| 1004159 bp 7 contigs ----isReversed: 1 ----hitSequence: UUUUUGUUAUUAUUUUAUCAAAUUAAAUGAUUAUUUUAUGAUCUUUUUAAUCAAUGAUUUUUAAAAA ----ssRNAplot: (((((....((((((((((((((.....(((.........))).))))))))))))))....))))) ----hitGC: 0.104478 ----pairStats: 22,0,0,6 hit 195 : 69317 69251 (rev) 13.96 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___......>>>->>>>>>>>>>>>>>- 1 gucucuuuuAUGAuGaccucagccuAAAccccucu......gggcggcugagguCuGAUg 54 :U:U: UU AU:AU : :U A:: UAAA+:::U U :::+ ::U A: : UG:U 934843 UUUUUGUU-AUUAUUUUAUCAAAUUAAAUGAUUAUuuuaugAUCUUUUUAAUCAAUGAU- 934900 ---->>>>> 55 ccuggagac 63 +U+:A:A: 934901 UUUUAAAAA 934909 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1796,emb|8254777| 613210 bp 4 contigs ----isReversed: 0 ----hitSequence: UUUUGAUUAUAUAAAAAUUAAAUUAACAAAUCUAAAAUUUGUGAAUCUAAUUAGUACUUUCCAAAA ----ssRNAplot: (((((......((((((((((((((......(((....))).)))))))))))))).....))))) ----hitGC: 0.151515 ----pairStats: 22,0,0,5 hit 196 : 506461 506526 (fwd) 18.11 bits <<<<<---.--<<<<<<<<<<<<<<.-----<<<___.>>>->>>>>>>>>>>>>>---- 1 gucucuuu.uAUGAuGaccucagcc.uAAAccccucu.gggcggcugagguCuGAUgccu 57 :U:U:+UU UA+ A::A::::A::: AAA+C : + : G+:::U::::U::G + C+U 506461 UUUUGAUUaUAUAAAAAUUAAAUUAaCAAAUCUAAAAuUUGUGAAUCUAAUUAGUA-CUU 506519 -.>>>>> 58 g.gagac 63 + :A:A: 506520 UcCAAAA 506526 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1796,emb|8254777| 613210 bp 4 contigs ----isReversed: 1 ----hitSequence: CUUACAUAAAGAUAUUUACUAAUUAAAACAUCAUAUGUUCUUGAGAUGAGUUUAUUCGUAAG ----ssRNAplot: (((((....((((((((((((((....(((...))))))))))))))))).......))))) ----hitGC: 0.241935 ----pairStats: 22,0,3,8 hit 197 : 469938 469877 (rev) 16.75 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___>>>->>>>>>>>>>>>>>-----.. 1 gucucuuuuAUGAuGaccucagccuAAAccccucugggcggcugagguCuGAUgccug.. 58 :U::C+U A:GAU: ::: +:::UAAA :::UC+::: :::+ ::: :UGA: + + 143273 CUUACAUA-AAGAUAUUUACUAAUUAAA-ACAUCAUAU-GUUCUUGAGAUGAGUUUAUuc 143329 >>>>> 59 gagac 63 G::A: 143330 GUAAG 143334 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1796,emb|8254777| 613210 bp 4 contigs ----isReversed: 1 ----hitSequence: UUUUUUUUAUAAGUUAGUUUUAAAUGAAAACAUUUUUAUAAUUAUUUAAAAUUUUAAUAUUAUAAA ----ssRNAplot: (((((......((((((((((((((......(((.....))).))))))))))))))....))))) ----hitGC: 0.0606061 ----pairStats: 22,0,1,5 hit 198 : 78478 78413 (rev) 16.59 bits <<<<<---.--<<<<<<<<<<<<<<----.-<<<___..>>>->>>>>>>>>>>>>>--- 1 gucucuuu.uAUGAuGaccucagccuAAA.ccccucu..gggcggcugagguCuGAUgcc 56 :U: :UUU UA:G:U::::U:A:::+AAA C:::U+U :::+:::U:A::::U:A: 534733 UUUUUUUUaUAAGUUAGUUUUAAAUGAAAaCAUUUUUauAAUUAUUUAAAAUUUUAA-UA 534791 -->>>>> 57 uggagac 63 U+: :A: 534792 UUAUAAA 534798 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1801,emb|8253978| 78956 bp 4 contigs ----isReversed: 0 ----hitSequence: AACUUAUUAAUUAUAUUUUUUUCUUAAAUACUUAAACAGUGGAAAUAAAUUUGGUGAUUAAGGU ----ssRNAplot: (((((.....((((((((((((((.....(((.....))).))))))))))))))....))))) ----hitGC: 0.1875 ----pairStats: 22,0,2,7 hit 199 : 67897 67960 (fwd) 14.12 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___..>>>->>>>>>>>>>>>>>----- 1 gucucuuuuAUGAuGaccucagccuAAAccccucu..gggcggcugagguCuGAUgccug 58 ::CU:+UU AU:AU: ::U ::::UAAA+:C:U + :G: :::: A:: :UG:U + U+ 67897 AACUUAUUAAUUAUAUUUUUUUCUUAAAUACUUAAacAGUGGAAAUAAAUUUGGU-GAUU 67955 >>>>> 59 gagac 63 :AG:: 67956 AAGGU 67960 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1834,emb|8254783| 212546 bp 6 contigs ----isReversed: 0 ----hitSequence: AAUAAAUUAAAUGAAGAAAGUGUUUUAAAUCACAUUGUGAUGAACAUUAUCUGAAUAAUUCAACUUUU ----ssRNAplot: (((((......((((((((((((((.....(((...)))..))))))))))))))........))))) ----hitGC: 0.205882 ----pairStats: 22,0,2,5 hit 200 : 96804 96871 (fwd) 16.61 bits <<<<<---.--<<<<<<<<<<<<<<-----<<<___>>>.->>>>>>>>>>>>>>----- 1 gucucuuu.uAUGAuGaccucagccuAAAccccucuggg.cggcugagguCuGAUgccug 58 :::: +UU A+GA:GA : :::::UAAA+C:C +UG:G +::::: : UC:GA+ U+ 96804 AAUAAAUUaAAUGAAGAAAGUGUUUUAAAUCACAUUGUGaUGAACAUUAUCUGAAUAAUU 96863 ...>>>>> 59 ...gagac 63 :::: 96864 caaCUUUU 96871 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1834,emb|8254783| 212546 bp 6 contigs ----isReversed: 1 ----hitSequence: UAUUUACCAAUGAAUGAAAAUUUCUAAAGUACUUACUGAGAUUUUCAUGAAUCCUAAUA ----ssRNAplot: (((((.....((((((((((((((....(((..))).))))))))))))))...))))) ----hitGC: 0.237288 ----pairStats: 22,0,1,3 hit 201 : 160255 160197 (rev) 19.25 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___>>>-.>>>>>>>>>>>>>>-----> 1 gucucuuuuAUGAuGaccucagccuAAAccccucugggc.ggcugagguCuGAUgccugg 59 :::U + + A+GA: ::::::::CUAAA :::++ ::: G:::::::: :GA+ C+ 52292 UAUUUACCAAUGAAUGAAAAUUUCUAAA-GUACU-UAC-uGAGAUUUUCAUGAA-UCC-U 52346 >>>> 60 agac 63 A::: 52347 AAUA 52350 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1834,emb|8254783| 212546 bp 6 contigs ----isReversed: 1 ----hitSequence: UUUUCAUUUAUGAAGAUAUUUAGAAAGGCUUAAAGCUAAUAACUAAUUAGAGAUAUGUAAA ----ssRNAplot: (((((.....((((((((((((.....(((...)))...)))))).))))))....))))) ----hitGC: 0.213115 ----pairStats: 22,2,2,5 hit 202 : 38454 38394 (rev) 14.91 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___>>>-..>>>>>>>>>>>>>>----- 1 gucucuuuuAUGAuGaccucagccuAAAccccucugggc..ggcugagguCuGAUgccug 58 :U: C+UUUA+GA::A U:+:::+AAA+:C:U +:G:+ :::+:A U::GA+ + + 174093 UUUUCAUUUAUGAAGA--UAUUUAGAAAGGCUUAAAGCUaaUAACUAA-UUAGAG-AUAU 174148 >>>>> 59 gagac 63 G :A: 174149 GUAAA 174153 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1842,emb|8253984| 204589 bp 2 contigs ----isReversed: 1 ----hitSequence: UUUAGUUUAUGUAUAUUUUUAAUUAAUUAAAUAUUUUUCAAUUAAAGAUUAAAUUCUCCAAA ----ssRNAplot: (((((....((((((((((((((.....(((....)))..))))))))))))))...))))) ----hitGC: 0.112903 ----pairStats: 22,0,1,5 hit 203 : 124084 124023 (rev) 14.08 bits <<<<<-----<<<<<<<<<<<<<<----.-<<<___.>>>-.>>>>>>>>>>>>>>---- 1 gucucuuuuAUGAuGaccucagccuAAA.ccccucu.gggc.ggcugagguCuGAUgccu 57 :U: :UUU AUG:: A::U:::::UAA +:::U U :::C :::::A::U ::AU CU 80506 UUUAGUUU-AUGUAUAUUUUUAAUUAA-uUAAAUAUuUUUCaAUUAAAGAUUAAAU-UCU 80562 ->>>>> 58 ggagac 63 : :A: 80563 -CCAAA 80567 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1846,emb|8254787| 18695 bp 1 contigs ----isReversed: 0 ----hitSequence: UAAAAAAGUAUGAUGGAAAUUUAUUAAAAUUUUAUUAAAACAUAGAAUUUUUUGAUAAUCUGUAGA ----ssRNAplot: (((((.....((((((((((((((.....(((.....)))..)))))))))))))).....))))) ----hitGC: 0.151515 ----pairStats: 22,0,3,9 hit 204 : 4463 4528 (fwd) 14.36 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___..>>>-.>>>>>>>>>>>>>>---- 1 gucucuuuuAUGAuGaccucagccuAAAccccucu..gggc.ggcugagguCuGAUgccu 57 :::: + UAUGAU:::::::: UAAA :::U U :::C ::::::::UGAU+ ++ 4463 UAAAAAAGUAUGAUGGAAAUUUAUUAAAAUUUUAUuaAAACaUAGAAUUUUUUGAUAAUC 4522 ->>>>> 58 ggagac 63 + :::: 4523 UGUAGA 4528 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1848,emb|8254788| 821283 bp 6 contigs ----isReversed: 1 ----hitSequence: UUCUUUUUAUAAAGAUAAAGUACCAAAAAAUUGAAAAUUUAUUGCUUUAUUUGCUAGUAAAAGUA ----ssRNAplot: (((((....((((((((((((((.....(((.....)))..)))))))))))))).....))))) ----hitGC: 0.184615 ----pairStats: 22,0,2,5 hit 205 : 298509 298445 (rev) 15.68 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___..>>>-.>>>>>>>>>>>>>>---- 1 gucucuuuuAUGAuGaccucagccuAAAccccucu..gggc.ggcugagguCuGAUgccu 57 :+CU:UUU AU A::A::::::: AAA :::U + :::+ :::::::U::G U+++ 522775 UUCUUUUU-AUAAAGAUAAAGUACCAAAAAAUUGAaaAUUUaUUGCUUUAUUUGCUAGUA 522833 ->>>>> 58 ggagac 63 :AG+: 522834 AAAGUA 522839 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1848,emb|8254788| 821283 bp 6 contigs ----isReversed: 1 ----hitSequence: GUUUUUUCUAUGGUAAUAUCUAAUUAAAUUCGACAGACUUUUUAAAUUUUGAAUUUAUAAAAAC ----ssRNAplot: (((((.....((((((((((((((.....(((..)))...)))))))))))))).....))))) ----hitGC: 0.1875 ----pairStats: 22,0,1,7 hit 206 : 188302 188239 (rev) 16.18 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___>>>-..>>>>>>>>>>>>>>----- 1 gucucuuuuAUGAuGaccucagccuAAAccccucugggc..ggcugagguCuGAUgccug 58 GU:U:UU+UAUG +:A :U ::: UAAA+:C C G:C ::: A: U:+ AU + + 632982 GUUUUUUCUAUGGUAAUAUCUAAUUAAAUUCGAC-AGACuuUUUAAAUUUUGAAU-UUAU 633039 .>>>>> 59 .gagac 63 :A:AC 633040 aAAAAC 633045 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1886,emb|8253992| 141270 bp 2 contigs ----isReversed: 0 ----hitSequence: CAGAUUGUUAUGAAAAGUUAUUUUCAAAUCUGUUAAAAGAAAGCUAUUUCAUAUAGUUUAAAUCUG ----ssRNAplot: (((((.....((((((((((((((.....(((....))).)))))))))))))).......))))) ----hitGC: 0.227273 ----pairStats: 22,0,2,7 hit 207 : 74220 74285 (fwd) 15.03 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___.>>>->>>>>>>>>>>>>>-----. 1 gucucuuuuAUGAuGaccucagccuAAAccccucu.gggcggcugagguCuGAUgccug. 58 :::::U UUAUG ::A: U:+::: AAA+C: U++ :G :::+:A :U:: AU+++U+ 74220 CAGAUUGUUAUGAAAAGUUAUUUUCAAAUCUGUUAaAAGAAAGCUAUUUCAUAUAGUUUa 74279 .>>>>> 59 .gagac 63 ::::: 74280 aAUCUG 74285 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1886,emb|8253992| 141270 bp 2 contigs ----isReversed: 1 ----hitSequence: UUCUAUUUAUGAUUAUUUAUUGGAAAAUAAUUUAAUUUAUUAUAAAUAAGAAUUCCUAAGAA ----ssRNAplot: (((((....((((((((((((((.....(((...))).)))))))))))))).....))))) ----hitGC: 0.129032 ----pairStats: 22,0,1,5 hit 208 : 21891 21830 (rev) 17.08 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___>>>->>>>>>>>>>>>>>----->> 1 gucucuuuuAUGAuGaccucagccuAAAccccucugggcggcugagguCuGAUgccugga 60 :UCU UUU A+GA A::U:: AAA+:::U++:::+ ::A::U GA+ C++ A 119380 UUCUAUUU-AUGAUUAUUUAUUGGAAAAUAAUUUAAUUUAUUAUAAAUAAGAAUUCCUAA 119438 >>> 61 gac 63 GA: 119439 GAA 119441 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1898,emb|8254798| 983259 bp 23 contigs ----isReversed: 0 ----hitSequence: UGUUUUUUAUCAAAAAAUAACCAAAAAAUUAUAAAAAUAAUUUAUUUUUGUUUUUAAAAUA ----ssRNAplot: (((((....((((((((((((((....(((.....)))))))))))))))))....))))) ----hitGC: 0.0819672 ----pairStats: 22,0,1,6 hit 209 : 287430 287490 (fwd) 14.06 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___..>>>->>>>>>>>>>>>>>----- 1 gucucuuuuAUGAuGaccucagccuAAAccccucu..gggcggcugagguCuGAUgccug 58 : :U:UUU AU:A::A::U:A : AAA ::: ++ ::: : U:A::U::G:U +U 287430 UGUUUUUU-AUCAAAAAAUAACCAAAAA-AUUAUAaaAAU-AAUUUAUUUUUGUU-UUUA 287485 >>>>> 59 gagac 63 :A: : 287486 AAAUA 287490 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1898,emb|8254798| 983259 bp 23 contigs ----isReversed: 0 ----hitSequence: UAUUUAUAUAUGAAAAUAUUAAAUUAAUUAGAUAAGUUUAAUACUAGAUUAAAUGAUAGA ----ssRNAplot: (((((.....((((((((((((((...(((..)))))))))))))))))......))))) ----hitGC: 0.116667 ----pairStats: 22,0,1,7 hit 210 : 457098 457157 (fwd) 14.54 bits <<<<<-----<<<<<<<<<<<<<<-----<<<___>>>->>>>>>>>>>>>>>.-----> 1 gucucuuuuAUGAuGaccucagccuAAAccccucugggcggcugagguCuGAU.gccugg 59 ::: :+U UAUGA:: ::U:A:::UAA ::: ::: :::U:A:: ::GAU + UG: 457098 UAUUUAUAUAUGAAAAUAUUAAAUUAA--UUAGA-UAA-GUUUAAUACUAGAUuAAAUGA 457153 >>>> 60 agac 63 ::: 457154 UAGA 457157 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1900,emb|8254799| 233521 bp 4 contigs ----isReversed: 0 ----hitSequence: AUUUUGUUAAAGAUAAAAAAAUUUUUAAAUAUUUUGGAUAUUAAUGUUAUUUGAUGGCAUAAAAU ----ssRNAplot: (((((.....((((((((((((((......(((...)))..)))))))))))))).....))))) ----hitGC: 0.138462 ----pairStats: 22,0,1,6 hit 211 : 126329 126393 (fwd) 15.72 bits <<<<<-----<<<<<<<<<<<<<<.-----<<<___.>>>.->>>>>>>>>>>>>>---- 1 gucucuuuuAUGAuGaccucagcc.uAAAccccucu.ggg.cggcugagguCuGAUgccu 57 :U:U: UU A:GAU:A :: A:: UAAA+:: U+ :: + ::U :: U:UGA:G+C 126329 AUUUUGUUAAAGAUAAAAAAAUUUuUAAAUAUUUU-gGAUaUUAAUGUUAUUUGAUGGCA 126387 ->>>>> 58 ggagac 63 +:A:A: 126388 UAAAAU 126393 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1933,emb|8254010| 681777 bp 6 contigs ----isReversed: 0 ----hitSequence: UUUUAUUUAUAUGAAAAAAAUUAAAUGAAUUAUUCAUUGUGCUUUAGUUUUUGAUAAGCAAAAAA ----ssRNAplot: (((((......((((((((((((((.....(((...)))..)))))))))))))).....))))) ----hitGC: 0.153846 ----pairStats: 22,0,1,8 hit 212 : 308629 308693 (fwd) 14.76 bits <<<<<---.--<<<<<<<<<<<<<<-----<<<___>>>-.>>>>>>>>>>>>>>.---- 1 gucucuuu.uAUGAuGaccucagccuAAAccccucugggc.ggcugagguCuGAU.gccu 57 :U:U UUU UAUGA::A:: :+:::U AA+:: UC+ ::+ :::+: ::U::GAU ++C 308629 UUUUAUUUaUAUGAAAAAAAUUAAAUGAAUUAUUCAUUGUgCUUUAGUUUUUGAUaAGCA 308688 ->>>>> 58 ggagac 63 A:A: 308689 -AAAAA 308693 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1971,emb|Mito-8232510| 45538 bp 1 contigs ----isReversed: 0 ----hitSequence: UUUUUUUUAUAUUUUUAUUUUUUUUUAAAAAUUAUAAAUACAAAAAAAUUUUAUAAAUUUAAAUA ----ssRNAplot: (((((......((((((((((((((.....(((...))).))))))))))))))......))))) ----hitGC: 0.0153846 ----pairStats: 22,0,0,6 hit 213 : 26726 26790 (fwd) 15.08 bits <<<<<---.--<<<<<<<<<<<<<<-----<<<___>>>->>>>>>>>>>>>>>.----- 1 gucucuuu.uAUGAuGaccucagccuAAAccccucugggcggcugagguCuGAU.gccug 58 :+:U:UUU UAU::U A::U:::: UAAA ::: ++::: ::::A::U U::U + +U+ 26726 UUUUUUUUaUAUUUUUAUUUUUUUUUAAAAAUUAUAAAUACAAAAAAAUUUUAUaAAUUU 26785 >>>>> 59 gagac 63 :A:+: 26786 AAAUA 26790 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1971,emb|Mito-8232510| 45538 bp 1 contigs ----isReversed: 1 ----hitSequence: GGUUUUUUAUGAUAAAAAUUAUUUAAAAGAUUACUAAAAUUAUAAUUUAUUAAUUUAUAAAAU ----ssRNAplot: (((((....((((((((((((((......(((....))).))))))))))))))....))))) ----hitGC: 0.0793651 ----pairStats: 22,0,1,8 hit 214 : 39484 39422 (rev) 14.56 bits <<<<<-----<<<<<<<<<<<<<<----.-<<<___.>>>->>>>>>>>>>>>>>----- 1 gucucuuuuAUGAuGaccucagccuAAA.ccccucu.gggcggcugagguCuGAUgccug 58 : :U:UUU AUG U: ::::::: UAAA + :: CU :: + ::::::: :U AU + + 6055 GGUUUUUU-AUGAUAAAAAUUAUUUAAAaGAUUACUaAAAUUAUAAUUUAUUAAU-UUAU 6112 >>>>> 59 gagac 63 :A: : 6113 AAAAU 6117 ----endhit Found 215 hits. done 2.08166e+08 nucs (frac lets thru so far=0.00596227134, 2d-fracLetsThru=0.00307584). Filter report: done 2.08166e+08 nucs (frac lets thru so far=0.0530127196, 2d-fracLetsThru=0.0280801). Filter report: done 1.10355e+07 nucs (frac lets thru so far=0.112468694, 2d-fracLetsThru=0.109538). FULL: done 2.08166e+08 nucs (frac lets thru so far=0.00596227134, 2d-fracLetsThru=0.00307584). CPU time: 113638.29u 4.48s 31:34:02.76 Elapsed: 31:35:10 DONEdoneDONEdone