Params: release/cmzasha --no-stderr --filter 40 20 /home/kasiaw/Rfam_7.0/CM/RF00037.cm /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta 1 specfile /home/kasiaw/results/Tetrahymena_thermophila.fasta/RF00037_IRE/RF00037_at20.filterspec 
Build: release
Host: node019
pid: 4113
---time: Mon Jul  4 05:27:08 2005

----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta
----specfile: hmm /home/kasiaw/Rfam_7.0_filters/RF00037_Saureus_compact.hmm hmm /home/kasiaw/Rfam_7.0_filters/RF00037_Saureus_expanded.hmm
----hmm-from-cmFileName: /home/kasiaw/Rfam_7.0/CM/RF00037.cm
----hmm-build-info: ;(default construction of HMM) Params: release/cmzasha --create-rigorous-filter 40 20 /home/kasiaw/Rfam_7.0/CM/RF00037.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec 	Build: release	Host: node002	pid: 14460	;Params: release/cmzasha --create-rigorous-filter 40 20 /home/kasiaw/Rfam_7.0/CM/RF00037.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec 	Build: release	Host: node002	pid: 14460	
----2struct-info: only-hmm
----hmm-from-cmFileName: /home/kasiaw/Rfam_7.0/CM/RF00037.cm
----hmm-build-info: ;(default construction of HMM) Params: release/cmzasha --create-rigorous-filter 40 20 /home/kasiaw/Rfam_7.0/CM/RF00037.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec 	Build: release	Host: node002	pid: 14460	;Params: release/cmzasha --create-rigorous-filter 40 20 /home/kasiaw/Rfam_7.0/CM/RF00037.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec 	Build: release	Host: node002	pid: 14460	
----2struct-info: only-hmm
----cmFile: /home/kasiaw/Rfam_7.0/CM/RF00037.cm (global)
----CM-scanning-logic: Infernal-0.55

----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta
----sequence: #615,emb|8254636| 516068 bp 3 contigs
----isReversed: 0
----hitSequence: AAUAUUUUAAACAGAGUUUUAAAUAAU
----ssRNAplot:   (((((.(((((......))))))))))
----hitGC: 0.111111
----pairStats: 10,0,0,1
hit 0   :  36294  36320 (fwd)    22.50 bits
           <<<<<---<<<<<______>>>>>->>>>>
         1 uuUcuCGCuucaACAGUGuUuggaCagAag 30      
           : U:U+  U::AACAG GUUU::A A:A :
     36294 AAUAUU--UUAAACAGAGUUUUAA-AUAAU 36320   

----endhit

----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta
----sequence: #745,emb|8254667| 356833 bp 5 contigs
----isReversed: 1
----hitSequence: AGUACUUUCAUCAGUGCAUAAAGUAUU
----ssRNAplot:   (((((.(((((......))))))))))
----hitGC: 0.296296
----pairStats: 10,0,1,1
hit 1   : 271913 271887 (rev)    20.08 bits
           <<<<<---<<<<<______>>>>>->>>>>
         1 uuUcuCGCuucaACAGUGuUuggaCagAag 30      
           ::U::+  U: A:CAGUG+:U :A ::A::
     84921 AGUACU--UUCAUCAGUGCAUAAA-GUAUU 84947   

----endhit

----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta
----sequence: #895,emb|8254697| 1227316 bp 10 contigs
----isReversed: 0
----hitSequence: UUUAGUAUCAACUGUGUUUGAUUUAAC
----ssRNAplot:   (((((.(((((......))))))))))
----hitGC: 0.259259
----pairStats: 10,0,1,1
hit 2   : 561745 561771 (fwd)    20.43 bits
           <<<<<---<<<<<______>>>>>->>>>>
         1 uuUcuCGCuucaACAGUGuUuggaCagAag 30      
           :UU: +  ::CAAC GUGUUUG::  :AA:
    561745 UUUAGU--AUCAACUGUGUUUGAU-UUAAC 561771  

----endhit

----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta
----sequence: #1250,emb|8254502| 112696 bp 1 contigs
----isReversed: 1
----hitSequence: GUUAUCAGCACAGUGUUGCUAUAAC
----ssRNAplot:   (((((.((((......)))))))))
----hitGC: 0.4
----pairStats: 10,1,0,0
hit 3   :  24370  24346 (rev)    20.78 bits
           <<<<<---<<<<<______>>>>>->>>>>
         1 uuUcuCGCuucaACAGUGuUuggaCagAag 30      
           :UU:UC  ::CA CAGUGU UG:: A:AA:
     88327 GUUAUC--AGCA-CAGUGU-UGCU-AUAAC 88351   

----endhit

----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta
----sequence: #1322,emb|8254379| 757155 bp 3 contigs
----isReversed: 0
----hitSequence: UAUUUCUUCAACAGUUUUUGAAGGAUC
----ssRNAplot:   (((((.(((((......))))))))))
----hitGC: 0.296296
----pairStats: 10,0,2,1
hit 4   : 123740 123766 (fwd)    21.21 bits
           <<<<<---<<<<<______>>>>>->>>>>
         1 uuUcuCGCuucaACAGUGuUuggaCagAag 30      
           :+U :C  U:CAACAGU UUUG:A : A+:
    123740 UAUUUC--UUCAACAGUUUUUGAA-GGAUC 123766  

----endhit

----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta
----sequence: #1426,emb|8254550| 192263 bp 3 contigs
----isReversed: 1
----hitSequence: UAUAUUUGUAACAGUGAUUACAGAAUA
----ssRNAplot:   (((((.(((((......))))))))))
----hitGC: 0.222222
----pairStats: 10,0,1,1
hit 5   :  11686  11660 (rev)    20.39 bits
           <<<<<---<<<<<______>>>>>->>>>>
         1 uuUcuCGCuucaACAGUGuUuggaCagAag 30      
           :+U :+  U::AACAGUG UU::A : A+:
    180578 UAUAUU--UGUAACAGUGAUUACA-GAAUA 180604  

----endhit

Found 6 hits.

done 2.08166e+08 nucs (frac lets thru so far=0.00111199072, 2d-fracLetsThru=0.000575016).
Filter report: done 2.08166e+08 nucs (frac lets thru so far=0.0041714676, 2d-fracLetsThru=0.00217969).
Filter report: done 868359 nucs (frac lets thru so far=0.266570623, 2d-fracLetsThru=0.263806).

FULL: done 2.08166e+08 nucs (frac lets thru so far=0.00111199072, 2d-fracLetsThru=0.000575016).

CPU time: 1384.84u 1.62s 00:23:06.45 Elapsed: 00:23:11
DONEdoneDONEdone