Params: release/cmzasha --no-stderr --filter 150 10 /home/kasiaw/Rfam_7.0/CM/RF00086.cm /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta 1 specfile /home/kasiaw/results/Tetrahymena_thermophila.fasta/RF00086_U27/RF00086_at10.filterspec Build: release Host: cs012 pid: 31055 ---time: Mon Jul 4 07:29:37 2005 ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----specfile: hmm /home/kasiaw/Rfam_7.0_filters/RF00086_Saureus_compact.hmm hmm /home/kasiaw/Rfam_7.0_filters/RF00086_Saureus_expanded.hmm ----hmm-from-cmFileName: /home/kasiaw/Rfam_7.0/CM/RF00086.cm ----hmm-build-info: ;(default construction of HMM) Params: release/cmzasha --create-rigorous-filter 150 10 /home/kasiaw/Rfam_7.0/CM/RF00086.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec Build: release Host: node006 pid: 17896 ;Params: release/cmzasha --create-rigorous-filter 150 10 /home/kasiaw/Rfam_7.0/CM/RF00086.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec Build: release Host: node006 pid: 17896 ----2struct-info: only-hmm ----hmm-from-cmFileName: /home/kasiaw/Rfam_7.0/CM/RF00086.cm ----hmm-build-info: ;(default construction of HMM) Params: release/cmzasha --create-rigorous-filter 150 10 /home/kasiaw/Rfam_7.0/CM/RF00086.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec Build: release Host: node006 pid: 17896 ;Params: release/cmzasha --create-rigorous-filter 150 10 /home/kasiaw/Rfam_7.0/CM/RF00086.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec Build: release Host: node006 pid: 17896 ----2struct-info: only-hmm ----cmFile: /home/kasiaw/Rfam_7.0/CM/RF00086.cm (global) ----CM-scanning-logic: Infernal-0.55 ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #474,emb|8254608| 140326 bp 2 contigs ----isReversed: 1 ----hitSequence: UGAAAAUGAAGAAUAAAUUGAAUAUAAUUAAUUAUAUUUUUGAAUAUAUUAAAUGAGAUAAUCUAAAAUAUUAUUUUUAAUUCUC ----ssRNAplot: ((((....................((((((......))))))......................................)))). ----hitGC: 0.117647 ----pairStats: 10,0,1,3 hit 0 : 57586 57502 (rev) 10.60 bits <<<<---------------------<<<<<<______>>>>>>-----.-------.--- 1 agucaAaGAUGAuuAaAUuaaAAAAuagacaAGCAUAugucugAAuUU.UCAUGUG.GAu 58 G :AA+GA GA+UAAAUU+ AA AUA: :AA AUAU: :UGAAU U U A UG GAU 82741 UGAAAAUGAAGAAUAAAUUG-AAUAUAAUUAAUUAUAUUUUUGAAUAUaUUAAAUGaGAU 82799 -----.--------------->>>>: 59 AAGCC.uAAUCUUgUgUCUGAgacua 83 AA C AAU UU+U+U U A: C + 82800 AAUCUaAAAUAUUAUUUUUAAUUCUC 82825 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #782,emb|8254819| 1807540 bp 14 contigs ----isReversed: 1 ----hitSequence: AGAUAAAAAUGAAAAAGAAAACAAAAAAGAAGAUAUUUAUGAAUUUAAAUUGGAAAAGCUUAUUCCUCUAAAAAGCUA ----ssRNAplot: ((((.................((((((........))))))................................)))). ----hitGC: 0.205128 ----pairStats: 10,0,0,2 hit 1 : 80660 80583 (rev) 10.80 bits <<<<---------------------<<<<<<___..___>>>>>>--------------- 1 agucaAaGAUGAuuAaAUuaaAAAAuagacaAGC..AUAugucugAAuUUUCAUGUGGAu 58 AG AAA AUG AAA ++ AAAA:A:A:AAG AUAU:U:U:AAUUU A UGGA+ 1726881 AGAUAAAAAUG---AAAAAG-AAAACAAAAAAGAagAUAUUUAUGAAUUU-AAAUUGGAA 1726935 -------------------->>>>: 59 AAGCCuAAUCUUgUgUCUGAgacua 83 AAGC U AU U +U+U+ A CUA 1726936 AAGCUU-AU-UCCUCUAAAAAGCUA 1726958 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1276,emb|8254365| 330390 bp 2 contigs ----isReversed: 0 ----hitSequence: AAUAAGUGAUGAUUAAAACACCAAAUAAUGAGCAAUUAUUUUUAAAUUUUAGAUUGGAAUACUAAUUUAAAUCUGAUAUUA ----ssRNAplot: ((((.....................(((((........)))).)................................)))). ----hitGC: 0.185185 ----pairStats: 10,1,1,1 hit 2 : 210440 210520 (fwd) 10.91 bits <<<<---------------------<<<<<<____..__>>>>>>--------------- 1 agucaAaGAUGAuuAaAUuaaAAAAuagacaAGCA..UAugucugAAuUUUCAUGUGGAu 58 A:U:A +GAUGAUUAAA A+ AAA :A::AGCA UA::U:U AAUUUU UGGA+ 210440 AAUAAGUGAUGAUUAAAACACCAAAU-AAUGAGCAauUAUUUUUAAAUUUUAGAUUGGAA 210498 -------------------->>>>: 59 AAGCCuAAUCUUgUgUCUGAgacua 83 CUAAU UU+ UCUGA:A:UA 210499 --UACUAAU-UUAAAUCUGAUAUUA 210520 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1436,emb|8254555| 596115 bp 4 contigs ----isReversed: 0 ----hitSequence: UAAAGAAUAUUAUAAAAUUAAAGAAAUAAAAUUUUAUUUUUGAAUUUCUUGUUCAUUAGCCAUUUUGUUUCAUAGAA ----ssRNAplot: ((((....................((((((......))))))..............................)))). ----hitGC: 0.155844 ----pairStats: 10,0,0,4 hit 3 : 450417 450493 (fwd) 11.01 bits <<<<---------------------<<<<<<______>>>>>>----------------- 1 agucaAaGAUGAuuAaAUuaaAAAAuagacaAGCAUAugucugAAuUUUCAUGUGGAuAA 60 : :+AA AU AU AAAUUA AA A:A:A:AA UAU:U:U:AAUUU C UGU AU A 450417 UAAAGAAUAUUAUAAAAUUA-AAGAAAUAAAAUUUUAUUUUUGAAUUU-CUUGUUCAUUA 450474 ------------------>>>>: 61 GCCuAAUCUUgUgUCUGAgacua 83 GCC AU UUGU+UC A: :A 450475 GCC--AUUUUGUUUC--AUAGAA 450493 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1538,emb|8254576| 194964 bp 10 contigs ----isReversed: 0 ----hitSequence: ACUAAAUAAUCAAACUAAUAAAAAAAAACAAUAAAAUGAAUCUGAAUAUUCAUAUCAUGAUAAACUAAAUUUUAAUUCUGUUAUUA ----ssRNAplot: ((((......................((((((......)))))).....................................)))). ----hitGC: 0.151163 ----pairStats: 10,0,0,4 hit 4 : 186029 186114 (fwd) 11.24 bits <<<<-------.--------------<<<<<<______>>>>>>----------..---- 1 agucaAaGAUG.AuuAaAUuaaAAAAuagacaAGCAUAugucugAAuUUUCAUG..UGGA 57 A U:AA+ AU A++ AAU+AAAAAA:A A: A AU :U U:AAU UUCAU GA 186029 ACUAAAUAAUCaAACUAAUAAAAAAAAACAAUAAAAUGAAUCUGAAUAUUCAUAucAUGA 186088 --------------------->>>>: 58 uAAGCCuAAUCUUgUgUCUGAgacua 83 UAA C AAU UU+ +UCUG :A UA 186089 UAAACUAAAUUUUAAUUCUGUUAUUA 186114 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1617,emb|8254736| 272088 bp 4 contigs ----isReversed: 0 ----hitSequence: AAAAAAAAAUAAAUCAAAUUAUUAAUAAAUAUUCAUUAAUUUUAACUUUAAUUUGAAAAUACUUAUUUUAUUUAUGAAAUUA ----ssRNAplot: ((((.......................((((((....))))))..................................)))). ----hitGC: 0.0731707 ----pairStats: 10,0,0,3 hit 5 : 217377 217458 (fwd) 10.82 bits <<<<-------.----------.----<<<<<<______>>>>>>--------------- 1 agucaAaGAUG.AuuAaAUuaa.AAAAuagacaAGCAUAugucugAAuUUUCAUGUGGAu 58 A: AAA AU AU+AAAUUA AA A:A:A: CAU :U:U:AA+UUU AU UG A+ 217377 AAAAAAAAAUAaAUCAAAUUAUuAAUAAAUAUU--CAUUAAUUUUAACUUUAAUUUG-AA 217433 -------------------->>>>: 59 AAGCCuAAUCUUgUgUCUGAgacua 83 AA CU AU UU+U+U+UGA :UA 217434 AAUACUUAUUUUAUUUAUGAAAUUA 217458 ----endhit Found 6 hits. done 2.08166e+08 nucs (frac lets thru so far=0.000183108404, 2d-fracLetsThru=9.30484e-05). Filter report: done 2.08166e+08 nucs (frac lets thru so far=0.000433321808, 2d-fracLetsThru=0.000220685). Filter report: done 90203 nucs (frac lets thru so far=0.422569094, 2d-fracLetsThru=0.421635). FULL: done 2.08166e+08 nucs (frac lets thru so far=0.000183108404, 2d-fracLetsThru=9.30484e-05). CPU time: 4015.37u 1.08s 01:06:56.44 Elapsed: 01:07:05 DONEdoneDONEdone