Selected Journal Papers

2021

• Multiplexed direct detection of barcoded protein reporters on a nanopore array, Nature Biotechnology (2021)
• Molecular-level similarity search brings computing to DNA data storage, Nature Communications, vol. 12, art. 4764 (2021)
• AI for radiographic COVID-19 detection selects shortcuts over signal, Nature Machine Intelligence (31 May 2021)
• Improving performance of deep learning models with axiomatic attribution priors and expected gradients, Nature Machine Intelligence (31 May 2021)
• Towards routine, city-scale accessibility metrics: Graph theoretic interpretations of pedestrian access using personalized pedestrian network analysis, PLoS ONE, 16(3) (19 March 2021)
• Identifying with all humanity predicts cooperative health behaviors and helpful responding during COVID-19, PLoS ONE, 16(3) (10 March 2021)
• Using smart speakers to contactlessly monitor heart rhythms, Communications Biology, vol. 4, art. 319 (2021)
• Absolute and arbitrary orientation of single-molecule shapes, Science, vol. 371, issue 6531 (19 Feb 2021)
• Microbial single-cell RNA sequencing by split-pool barcoding, Science, vol. 371, issue 6531 (19 Feb 2021)

2020

• Rapid and robust assembly and decoding of molecular tags with DNA-based nanopore signatures, Nature Communications, vol. 11, art. 5454 (2020)
• Wireless steerable vision for live insects and insect-scale robots, Science Robotics, vol. 5, issue 44 (15 July 2020)
• Probing the physical limits of reliable DNA data retrieval, Nature Communications, vol. 11, art. 616 (2020)
• Controlling for Participants' Viewing Distance in Large-Scale, Psychophysical Online Experiments, Nature Scientific Reports vol. 10, art. 904 (2020)
• From local explanations to global understanding with explainable AI for trees, Nature Machine Intelligence (17 January 2020)

2019

• Consumer-grade fabrication and its potential to revolutionize accessibility, Communications of the ACM, 62 (10), 64-75 (24 September 2019)
• Modeling other minds: Bayesian inference explains human choices in group-decision making, Science Advances, vol. 5, no. 11 (27 November 2019)
• Assessment of Machine Learning of Breast Pathology Structures for Automated Differentiation of Breast Cancer and High-Risk Proliferative Lesions, JAMA Network Open, 2(8):e19877 (9 August 2019)
• DNA assembly for nanopore data storage readout, Nature Communications, vol. 10, art. 2933 (2019)
• Contactless cardiac arrest detection using smart devices, npj Digital Medicine, 2, art. 52 (2019)
• De novo protein design by citizen scientists, Nature (5 June 2019)
• Detecting middle ear fluid using smartphones, Science Translational Medicine, vol. 11, issue 492 (15 May 2019)
• Molecular digital data storage using DNA, Nature Reviews Genetics (8 May 2019)
• BrainNet: A Multi-Person Brain-to-Brain Interface for Direct Collaboration Between Brains, Nature Scientific Reports, vol. 9, art. 6115 (2019)
• High density DNA data storage library via hydration with digital microfluidic retrieval, Nature Communications, vol. 10, art. 1706 (2019)
• Demonstration of end-to-end automation of DNA data storage, Nature Scientific Reports, vol. 9, art. 4998 (2019)
• AIControl: Replacing matched control experiments with machine learning improves ChIP-seq peak identification, Nucleic Acids Research, gkz156 (14 March 2019)
• Opioid overdose detection using smartphones, Science Translational Medicine, vol. 11, issue 474 (9 Jan 2019)

2018

• Explainable AI predicts blood-oxygen levels during anaesthesia, Nature Biomedical Engineering, vol. 2, pp. 749–760 (2018)
• Single-cell profiling of the developing mouse brain and spinal cord with split-pool barcoding, Science, vol. 360, issue 6385, pp. 176-182 (13 Apr 2018)
• Random access in large-scale DNA data storage, Nature Biotechnology, vol. 36, pp. 242–248 (2018)
• A machine learning approach to integrate big data for precision medicine in acute myeloid leukemia, Nature Communications, vol. 9, art. 42 (2018)

2017 & Earlier

• A spatially localized architecture for fast and modular DNA computing, Nature Nanotechnology, vol. 12, pp. 920–927 (2017)
• Determining crystal structures through crowdsourcing and coursework, Nature Communications, vol. 7, art. 12549 (2016)
• Navigating a 2D virtual world using direct brain stimulation, Frontiers in Robotics and AI (16 November 2016)
• A direct brain-to-brain interface in humans, PLOS ONE (5 November 2014)
• Conditionally fluorescent molecular probes for detecting single base changes in double-stranded DNA, Nature Chemistry, vol. 5, pp. 782–789 (2013)
• Increased Diels-Alderase activity through backbone remodeling guided by Foldit players, Nature Biotechnology, vol. 30, pp. 190–192 (2012)
• Crystal structure of a monomeric retroviral protease solved by protein folding game players, Nature Structural & Molecular Biology, vol. 18, pp. 1175–1177 (2011)