HW4 Results

Part 1

  ° Performance of CLUSTALW and DIALIGN on planted random motifs

Part 2

Alignments found by students
  1. Archaeoglobus fulgidus
  2. Aeropyrum pernix
  3. Aeropyrum pernix
  4. Bacillus subtilis
  5. Caulobacter crescentus
  6. Chlamydophila pneumoniae CWL029
  7. Deinococcus radodurans
  8. E. coli K12
  9. Halobacterium sp. NRC-1
  10. Helicobacter pylori J99
  11. Helicobacter pylori 26695
  12. Lactococcus Lactis
  13. Methanococcus jannaschii
  14. Mycobacterium leprae
  15. Mycoplasma pneumoniae
  16. Mycoplasma pneumoniae
  17. Mycobacterium tuberculosis
  18. Pyrococcus abyssi
  19. Streptococcus pyogenes AE004092: Summary and full results.
  20. Sulfolobus solfataricus
  21. Synechocystis
  22. Synechocystis #1 #2
  23. Thermoplasma acidophilum
  24. Thermoplasma volcanium
  25. Thermotoga maritima
  26. Xylella fastidiosa