CSE 356
Areas of interest: Computational biology

(*) indicates joint first authorship

Sperber H*, Mathieu J*, Wang Y*, Ferreccio A, Hesson J, Xu Z, Fischer K, Devi A, Detraux D, Gu H, Battle SL, Showalter M, Bielas JH, Ericson NG, Margaretha L, Robitaille AM, Margineantu D, Fiehn O, Hockenbery D, Blau CA, Raftery D, Margolin A, Hawkins RD, Moon R, Ware CB, and Rouhola-Baker H (2015), “The metabolome regulates the epigenetic landscape during naïve to primed human embryonic stem cell transition”, Nature Cell Biology 17, 1523–1535.

Wang Y, Eddy JA, Price ND (2012). "Reconstruction of genome-scale metabolic models for 126 human tissues using mCADRE." BMC Systems Biology 6(1): 153. Designated Highly Accessed by BioMed Central, Most Viewed, Dec 2012-Jan 2013

Kreipke R*, Wang Y*, Miklas J, Mathieu J, Ruohola-Baker H (2016). Metabolic Remodeling in early development and cardiomyocyte maturation. Seminars in Cell and Developmental Biology, Advanced Online Publication

Salomonis et al (2016). “Integrated Genomic Analysis of Diverse Induced Pluripotent Stem Cell from The Progenitor Cell Biology Consortium”, Stem Cell Reports

Sung J, Wang Y, Chandrasekaran S, Witten DM, Price ND (2012). "Molecular signatures from omics data: From chaos to consensus." Biotechnology Journal 7(8): 946-957.

Sung J, Kim PJ, Ma S, Funk CC, Magis AT, Wang Y, Hood L, Geman D, Price ND (2013). “Multi-study Integration of Brain Cancer Transcriptomes Reveals Organ-Level Molecular Signatures.” PLoS Computational Biology, 9(7): e1003148.

Ma S, Sung J, Magis AT, Wang Y, Geman D, Price ND (2014). “Measuring the effect of inter-study variability on learning molecular signatures.” PLoS ONE, 9(10): e110840.